Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212628g00003 ATGGAGAGAAACTCTCTCTGGGTAGCCTTCATTACATCGCTTATCCTCCTAAAAATTGTCAACTGCGTTGAGGATGAAGTCAAGAGCACAATGGTTCTCTTTCTTGCACAACTCTCTGGTAATGATGATAGTCAGCAGAATTTCACTTTGAATTGGAAACTAGGCTCCGATCCCTGCATAGACCAATGGCAAGGTGTAGTGTGTGATTCTCCAAACTCTTCGGTCAAGAATTTGTTACTAGACAGGCTAAGCTTATCTGGAACTCTTGATGTTTCTATGCTTTGCAACTTGCCTTCCTTAGCTGCATCTCTCACTTATCTTAGTCTCGACGGCAACAGCGTCCACGGAGGCATCTCTGAAGAGATCGCGAGATGCAAACAACTCACAAGCCTACACTTAAGCGGAAACCATCTTTCTGGAAACCTTCCCTCTTCGCTTTCAAAGTTAAACAATTTAGAGAGATTGGATATATCTAACAACAACTTTTCGGGACGGTTACAGCATGATTTTGCTGGAATCTCAAAGCTGAATATGTTCCTAGCACAGAATAATCATCTCAGTGGAGAAATACCGCCGTTTAATTTCTCCAATTTCGACCAGTTTGATGTCTCCTTCAACAATTTCAGTGGAGTTATTCCAGATGTACATGGCCATTTCGCAGCAGAAAGCTTCCTCGGTAACCCTCAGCTCTGTGGTGCTCCATTACCAAAGAATTGCACTGGCTCATCAGTGGCTGGTAGCAAAAATTCAGAAGAGCAGAAGGAATCAGCAGAGGCCCCTTCACGTTCCCCTGCAATTGCCGGTGACAATTCTTCTGAAGAAACAAAGAAATCATCAAAAAATGGCCCTTCAATAGAGCAGATCCTTATGTATTCAGGGTACGCTGCGATCGGAGCTTTCGTGATCCTTGTAATTGTGTGGAAGCTGTGCACAAGAAAAAGGAAAGAAAAGAGAGTTGAAGCGTTATTGAATGAGAAAGCTGTAAATCAAGAAGGTAGTACTCAGAAGGCTAACTATGTTTCAAGTGAAAACAGAGCACGGGTAAGCCGATCAGACTTCTCGGTAACTTCCGAAAGCGGCATGGTTTCGCAATCACTTGTAGTTCTTTCGAGGAACACTATGCATGAATTGAAGCTAGAAGACTTGCTTAAGGCACCAGCTGAATTGATTGGAAGAGGAAAGAATGGTAGCCTTTATAAGGTGGTTCTTGAAAATGGGAAAATGGTGGTTGTGAAAAGGATCATCGATAGGTCTGTTCCTGGCAGCGATTTCAAGAAAAGAATGCAAATTTTGAATCAAGTGAAGCACCCTTATGTGATGTCACCTCTTGCTTTCTATTGCTCCAAGCAAGAGAAGCTTTTGGTATATGAATATCAGCAAAATGGAAGTTTATTTAAGCTTCTACATGGTGCCCAAAAATCGTTTGACTGGACCAGCAGACTTGGGATTGCAGCTACCACTGCTGAGGCATTAGCTTTCATGCATCAAGAGCTTGGCCAACAAGGCATCACACATGGCAACCTAAAATCATCCAACATTTTGCTTAACATGAACATGGAACCATGCATTAGTGAGTATGGTGTGATGGGTGGGGAAGATTACCAACAACAGCAACAGCAACAACAACATAGTTCATCTTTCCTTAGTTCTTTCGCCTCCATCGCGTCGTCAGATCCCACCGCCTTCAAGGAAGATGTCTACGGATTCGGCGTCATTCTTCTCGAACTACTTACCGGAAAGTTGGTAAAGAGCGAAGGGATGGAGTTGACGGAGTGGGTTCAGTCAGTTGTGAGGGAAGAATGGACAGGTGAAGTGTTTGACAGGACTCTGATATCAGAGTATGCAAGTGAAGAAAGGATGGTCAATTTGCTTCAGGTGGCTATAAGGTGTGTAAATCGTTCCCCTGAAGCTAGGCCAATTATGAACCAAGTTGCTCTAATGATTAACACTATAAAGGAGGAAGAAGAAAAGTCTTTGATCTATGAAGTCTGTCGTCGTCGAGGGTTGAGGTTAAGAGCATTCATCACCGTCACCTGCAGCGTCAACAATTCAACTGAAGCTCAAACTACCATTGCTAAGCTTGGAGGTTGA 2091 0.4333 MERNSLWVAFITSLILLKIVNCVEDEVKSTMVLFLAQLSGNDDSQQNFTLNWKLGSDPCIDQWQGVVCDSPNSSVKNLLLDRLSLSGTLDVSMLCNLPSLAASLTYLSLDGNSVHGGISEEIARCKQLTSLHLSGNHLSGNLPSSLSKLNNLERLDISNNNFSGRLQHDFAGISKLNMFLAQNNHLSGEIPPFNFSNFDQFDVSFNNFSGVIPDVHGHFAAESFLGNPQLCGAPLPKNCTGSSVAGSKNSEEQKESAEAPSRSPAIAGDNSSEETKKSSKNGPSIEQILMYSGYAAIGAFVILVIVWKLCTRKRKEKRVEALLNEKAVNQEGSTQKANYVSSENRARVSRSDFSVTSESGMVSQSLVVLSRNTMHELKLEDLLKAPAELIGRGKNGSLYKVVLENGKMVVVKRIIDRSVPGSDFKKRMQILNQVKHPYVMSPLAFYCSKQEKLLVYEYQQNGSLFKLLHGAQKSFDWTSRLGIAATTAEALAFMHQELGQQGITHGNLKSSNILLNMNMEPCISEYGVMGGEDYQQQQQQQQHSSSFLSSFASIASSDPTAFKEDVYGFGVILLELLTGKLVKSEGMELTEWVQSVVREEWTGEVFDRTLISEYASEERMVNLLQVAIRCVNRSPEARPIMNQVALMINTIKEEEEKSLIYEVCRRRGLRLRAFITVTCSVNNSTEAQTTIAKLGG 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212628g00003 696 SUPERFAMILY L domain-like 54 219 - -
Stsc212628g00003 696 MobiDBLite consensus disorder prediction 241 281 - -
Stsc212628g00003 696 Gene3D Transferase(Phosphotransferase) domain 1 460 667 - -
Stsc212628g00003 696 FunFam Leucine-rich repeat receptor protein kinase EMS1 94 193 - -
Stsc212628g00003 696 Gene3D Ribonuclease Inhibitor 22 100 IPR032675 -
Stsc212628g00003 696 Gene3D Ribonuclease Inhibitor 101 246 IPR032675 -
Stsc212628g00003 696 PANTHER OS05G0588300 PROTEIN 11 653 - -
Stsc212628g00003 696 SUPERFAMILY Protein kinase-like (PK-like) 387 647 IPR011009 -
Stsc212628g00003 696 ProSitePatterns Protein kinases ATP-binding region signature. 390 412 IPR017441 GO:0005524
Stsc212628g00003 696 Pfam Protein kinase domain 388 644 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc212628g00003 696 ProSiteProfiles Protein kinase domain profile. 384 651 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc212628g00003 696 Gene3D Phosphorylase Kinase; domain 1 350 458 - -
Stsc212628g00003 696 Pfam Leucine rich repeat N-terminal domain 34 69 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212628g00003 Stsc-Chr212628 10752 14378 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212628g00003 52 652 Receptor kinase-like Gene Family AT1G68400 35.680 4.13e-94 304
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Stsc212628g00003 Pkinase 1.3e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212628g00003 - - aip:107605318 1029.62