Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212626g00003 ATGAACAATTTCATGCCTCTGCCTGGGTCTCGAAGAACAAGTAGTGATCATAGAAGAGAATTTAATATTTACACTTTTGATAATAGTGATTCCAATGAGGTGCCTGTGTTTCACAGATCTCGCTCTAATCATAACACTGGGAACAGGAATTTGGGTGCGCAAGATCCAAGGAGGTTGTTTGAAAGAAGAACTCCATCATTTGGAAGCCAACGCCACACTGCACCAATTTTTCAAGCACAACCACAAAACAGACAACAATTTCATTTTCATAATAGGGACATAGGAAGGAGTTCAAACCCCAGGTTTAGAGAGACTTTTCCGCAATCACCGCCGCGACCTGCGACAACCATAGAAGTTCCCTCACCACAAGTAGAGAATTCTGAGTCGATGGCTCTTAGCAAGCTCAAGAAAGAAGTCTACAACCCTGCGCCGAAGCGCCTAGCCCGGAAACTCGGCTTATACTACAGAGGTAACAGCAACAATAATGGCTCGAATGGTATACGAGAAAGGGAGAAAGACAAGGATGAAGAAGGTAAGAGTTGTGCTGTTTGCTTGGAAGATTTTGAGGCAAAAGAAGAAGTGATGGTAACACCATGTAACCACATGTTCCATGAGGGATGCATTGTTCCTTGGGTAACAAGCAAAGGACAGTGCCCAGTTTGTAGGTTTGTGATAATTGAGAGAGTTAGAGGGAATAATCTTTACCCTGCTTCGTTCAATAGCAGTAACATTGCAAATTTGGAACCAAGTGAAGTAATTGCTGGTGAGCTTTTGTCAATTTTGAGGGCCATGGAAGAAGCTTTTCAGTTGGGGAATGGAATGTACTAG 828 0.43 MNNFMPLPGSRRTSSDHRREFNIYTFDNSDSNEVPVFHRSRSNHNTGNRNLGAQDPRRLFERRTPSFGSQRHTAPIFQAQPQNRQQFHFHNRDIGRSSNPRFRETFPQSPPRPATTIEVPSPQVENSESMALSKLKKEVYNPAPKRLARKLGLYYRGNSNNNGSNGIREREKDKDEEGKSCAVCLEDFEAKEEVMVTPCNHMFHEGCIVPWVTSKGQCPVCRFVIIERVRGNNLYPASFNSSNIANLEPSEVIAGELLSILRAMEEAFQLGNGMY 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212626g00003 275 FunFam RING/U-box superfamily protein 165 238 - -
Stsc212626g00003 275 SMART ringv_2 180 222 IPR011016 GO:0008270
Stsc212626g00003 275 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 165 234 IPR013083 -
Stsc212626g00003 275 SMART ring_2 181 221 IPR001841 -
Stsc212626g00003 275 MobiDBLite consensus disorder prediction 92 125 - -
Stsc212626g00003 275 ProSiteProfiles Zinc finger RING-type profile. 181 222 IPR001841 -
Stsc212626g00003 275 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 51 223 - -
Stsc212626g00003 275 Pfam Ring finger domain 180 222 IPR001841 -
Stsc212626g00003 275 SUPERFAMILY RING/U-box 171 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212626g00003 Stsc-Chr212626 11736 14394 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212626g00003 126 272 C3H Transcription Factor Family AT3G58720 51.333 2.44e-43 146
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212626g00003 - - gmx:100802085 260.381