Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212621g00003 ATGTCTCATATGAGCTTTCTATTGCAACCCATTTTCCTCCATGTATTCTCTGCCATTATCCACCTCATGCTGGTGGCTATGGTTTTGGTGTCTTGGCTCTGGAAGAAAATGACAGTTGGAGACACCAGTGATGATTCTAACAAACACCAGAAGCTCAAGAATAAAGCTATGTTAAGAAAGACTTTGTTTTGTTCTTTGGGTGTTTCTGCATTCAACTTTATCCTCTGTCTCTATAGCTATTACTTCTTATTAGAGGAAGAAGGAAAGCTTGTGACCCTTTTGGATTTAGCTCTCAAAACTGTTGCTTGGGGTTTTGTCAGTGTTTGCTTACACAAGAGGTGGTTCTTCTTCTTGATCAAGTCTTGGTGTGTTTTCTATTTCTTCCTTTCATGTTACTCCTTTGTAGCTGACATTGTTGTTCTCTTGTATGAAAAAAATGTGGCTTTACCAGCTCAGTATGTAGTTTCTGATGTTGTATCAGCTTCTGTGGGTTTATTCTTTTGTTATGTGTTTTGTTTTGTGAAGAATGTTAGTGAGTGTGAAGAGAATCATGTCAGTGATGATCTTCAAGATCCACTTCTGTGTAATGGTAGTGCAACTGTTTGTAGTAATGCCTCTGAGGGTGACAATGTTACCCCTTTCTCAAATGCTGGCATTTTCAGCATTCTTACATTCTATTGGGTGGGTCCTCTTATTTCTCTTGGGAATAAGAAGACCTTGAACCCTGAGGATGTTCCAAAACTTGATAAAGGAGATAGTGTTTTTGGGGTTTTTCCAACTTTCAGAGAGAGAATTGAGAAAGATTGTGGTGAAATCAACCACATAAGCACTCTTAAGCTGGTGAAGTTGTTGGTACTCTCAGCTTGGAGAGAGATTCTCTTCACTGGTTTTCTTGCTTTCTTGAACACTTTGGCTTCTTATGTTGGTCCTTATCTTATTGATTCCTTTGTTCAATACCTTGATGGACAAAGGGTGAATGAAAAACAGGGCTATGTTCTGGTTTCTGCATTTTTCATCTCAAAACTTGTTGAGTCCCTTTCACAAAGGCATTGGTTGTTTAGGTTGCAGCAAGTTGGAATTAGAATCCAGGCACTGCTTGTGACTCTGATCTATAACAAAGGATTAACCCTTTCCTGTCAATCAAAGAAGGGTCATACTTCTGGTGAAATGATCAATTTCATGGCAGTTGATGCTGGAAGAGTTGGCAACTTCACTTGGTATATGCATGATTTGTGGAGGGTAGCTCTGCAAATTGCCTTGGCCTTGTTGATTTTGTATAAAAATGTTGGTCTTGCTTCAATCGCCGCGTTTGTGGCAACAATCATTGTAATGTTGATAAATGTTCCTCTGGGGAAATTACAAAAGAAGTTCCAGAAGAACATGATGGACTCCAAGGATACAAGGATGAAGGCAACATCTGAGATTCTAAGGAACATGAAGATTCTCAAACTACAAGGATGGGAAATGAAGTTCTTATCTAAGATAACTGGCCTCAGGAAAATTGAGGAAGGGTGGTTAAAGAAATCTGTTTACAATGGAGCTATCACTGCTTTTGTGTTCTGGGTTGCTCCTACTTTTGTATCTGTTGTTACTTTTGGTGCATGCATGCTTTTGGGGATTCCACTTGAATCAGGGAAGATCTTATCAGCACTTGCAACATTCAGAAACCTTCAAGTTCCCATATATAATCTTCCAAGTACAATTTCAGCTATAATACAAACTAAGGTTTCTCTTGATAGGATTTCGTCGTTCCTTCGACTCGAGGACTTGCAATCTGATGTTGTAGAGAAGCTCCCTTTCGGTACTTCAGATAAAGCAATTGAAGTAACTAACGGAAACTTCTCCTGGGATCTATCTTCTTCAATTACAACATTGAAGAACATAAATCTCGAAGTTTTTCATGGCATGAAGGTTGCTGTTTGTGGGACAGTAGGATCAGGGAAGTCTACATTGCTTTCTTCTATATTGGGTGAGGTACCAAAGGTTTCAGGCACTCTAAAAGTGTGTGGAACAAAGGCCTATGTTGCTCAATCACCATGGATACAAAGTGGGAAGATAGAAGAAAATATACTGTTTGGTAAAGAGATGGATAGGGAAAGTGCTGTGGATGCTCATACAGGATCACACCTCTTTAAGGAATGTTTGCTAGGCCTTTTAAGTTCAAAGACAGTAGTTTATGTTACTCATCAAGTTGAGTTCTTACCTGCTGCTGATCTTATATTGGTAATGAAAGATGGGGAGATTACTCAATGTGGAAAGTATGCTGATCTGCTTAAAAATGGAACTGATTTTATGGAACTTGTTGGTGCACATAAAAAAGCTTTGTCTACACTTGATTCAATGGATGAAGGAGTTGTATCCAATGAAATAAGTACCTTGGAACAAGATTCAGATGTTCCAATTTCTCAGGGTGGAGAAAAAGAAGAGGAAAAGAAAGATGAGCAAAATGGTAAAATTGGTAACAAAGGTGATGAGGCAAAAGGCCAACTTGTTCAAGAAGAAGAAAGAGAGAGAGGTAAAGTTGGATTTTCAGTGTATTGGCAATATATCACTACTGCATATGGAGGTGCTCTTGTTCCTTTCATTCTGTTGGCTCATACTCTCTTCCAAGTTCTTCAAATTGGAAGCAACTATTGGATGGCTTGGGCAACACCAATCTCACAAGATGTTGAGGCACCTGTTTCAAGCACAACTCTTATAGCTGTCTATGTTGCTTTGTCTGTTGCAAGTTCTTTCTGCATCCTTGGAAGGACAACACTTCTTGCCACTGCTCTATATAAGACAGCTACCATAATCTTCAATAAGATGCACTTCTGCATCTTTCGTGCTCCAATGGCCTTCTTTGATTCCACTCCAAGCGGCCGAATTCTTAATAGAGTTTCTACTGACCAAAGTGCAGTAGACACAATCATCCCTTATCAAGCTGCTTCATTTGCCTTTCTCTTGATCCAGCTTTTGGGAATTGTTGCAGTGATGTCTCAATCTGCATGGCAAGTTTTCATTGTCTTCATACCTGTGATAGCAATCAGCATTTGGTATCAGCAATATTATTTACCACCATCTCGAGAACTATCGCGGTTAGTTGGAGTATGCAAAGCACCAATCATTCAGAACTTTTCTGAAACAATTTCTGGCACATCAACCATTAGAAGCTTTGATCAGCAGTCTAGATTTCAGGAAAAGAATATGAAACTAATTGATGGGTATTCACAGCCAAATTTCAATAGTGCTGGTGCATCTGCATGGTTATGCTTCCGTCTGGATATATTGTCTTCAATCACATTTGCCTTTTCTGTGATATGCTTGATGCTTATTCCTAAAGGAGTTATAGATCCAGGCCTTGCTGGTTTATCTGTTACCTATGGACTCAATTTGAACTCGGTTAATGCTACGGTGATTCGGATTCTTTGCGACTTGGAGAACAAGATGATATCTGTAGAAAGAATACTTCAGTATACATCCATTCGTAGTGAGCCTCCTCTTGTTGTAGAAGAAAACAGACCAAATTCTTCTTGGCCATCAAATGGAGAAGTTGATATATGCAACTTGCAGGTTCGGTATGCTCCGCACCTTCCACTTGTGTTGCATGGCCTCACATGCACATTTCGTGGAGGATTGAAAACCGGCATTGTTGGGAGAACAGGAAGTGGCAAAACAACTCTCATACAAACTCTGTTCCGAATCATCGAACCGGCTGCTGGAGAAGTTGTGATTGATGGAATCAACATATCTTCAATAGGACTTCATGATTTGAGGTCTAGATTGAGCATTATTCCTCAGGACCCAACCATGTTTGAAGGGACAGTTAGAAACAATCTGGATCCACTAGAGGAGTACACTGATGAACAAATTTGGGAGGCACTTGAAAAGTGTCAACTTGGTGAAGAAGTTAGAAGAAAAGAAGGGAAGTTGGACTCTCCAGTTAGCGAAAATGGCGAGAATTGGAGCATGGGACAGAGGCAATTGGTGTGCCTAGGTAGGGTGCTTCTGAAGAAGAGTAAGGTATTGGTGCTTGACGAAGCGACTGCATCGGTTGATACTGCAACAGATAATTTGATTCAGCAAACTCTTAGGCTGCATTTCTCTGACTCAACAGTCATAACCATTGCACATAGAATCACTTCTGTTCTTGACAGTGATATGGTCTTGCTTCTTCATCAAGGACTAATTGAAGAGTATGACTCACCTTCAAAATTGCTAGAGGATAAGTCATCATCTTTTGCTCAACTTGTTGCAGAGTATACAATGAGATCCAAAACTAATTTTCAGAAGTCTTCTAATCACTGA 4287 0.3979 MSHMSFLLQPIFLHVFSAIIHLMLVAMVLVSWLWKKMTVGDTSDDSNKHQKLKNKAMLRKTLFCSLGVSAFNFILCLYSYYFLLEEEGKLVTLLDLALKTVAWGFVSVCLHKRWFFFLIKSWCVFYFFLSCYSFVADIVVLLYEKNVALPAQYVVSDVVSASVGLFFCYVFCFVKNVSECEENHVSDDLQDPLLCNGSATVCSNASEGDNVTPFSNAGIFSILTFYWVGPLISLGNKKTLNPEDVPKLDKGDSVFGVFPTFRERIEKDCGEINHISTLKLVKLLVLSAWREILFTGFLAFLNTLASYVGPYLIDSFVQYLDGQRVNEKQGYVLVSAFFISKLVESLSQRHWLFRLQQVGIRIQALLVTLIYNKGLTLSCQSKKGHTSGEMINFMAVDAGRVGNFTWYMHDLWRVALQIALALLILYKNVGLASIAAFVATIIVMLINVPLGKLQKKFQKNMMDSKDTRMKATSEILRNMKILKLQGWEMKFLSKITGLRKIEEGWLKKSVYNGAITAFVFWVAPTFVSVVTFGACMLLGIPLESGKILSALATFRNLQVPIYNLPSTISAIIQTKVSLDRISSFLRLEDLQSDVVEKLPFGTSDKAIEVTNGNFSWDLSSSITTLKNINLEVFHGMKVAVCGTVGSGKSTLLSSILGEVPKVSGTLKVCGTKAYVAQSPWIQSGKIEENILFGKEMDRESAVDAHTGSHLFKECLLGLLSSKTVVYVTHQVEFLPAADLILVMKDGEITQCGKYADLLKNGTDFMELVGAHKKALSTLDSMDEGVVSNEISTLEQDSDVPISQGGEKEEEKKDEQNGKIGNKGDEAKGQLVQEEERERGKVGFSVYWQYITTAYGGALVPFILLAHTLFQVLQIGSNYWMAWATPISQDVEAPVSSTTLIAVYVALSVASSFCILGRTTLLATALYKTATIIFNKMHFCIFRAPMAFFDSTPSGRILNRVSTDQSAVDTIIPYQAASFAFLLIQLLGIVAVMSQSAWQVFIVFIPVIAISIWYQQYYLPPSRELSRLVGVCKAPIIQNFSETISGTSTIRSFDQQSRFQEKNMKLIDGYSQPNFNSAGASAWLCFRLDILSSITFAFSVICLMLIPKGVIDPGLAGLSVTYGLNLNSVNATVIRILCDLENKMISVERILQYTSIRSEPPLVVEENRPNSSWPSNGEVDICNLQVRYAPHLPLVLHGLTCTFRGGLKTGIVGRTGSGKTTLIQTLFRIIEPAAGEVVIDGINISSIGLHDLRSRLSIIPQDPTMFEGTVRNNLDPLEEYTDEQIWEALEKCQLGEEVRRKEGKLDSPVSENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRLHFSDSTVITIAHRITSVLDSDMVLLLHQGLIEEYDSPSKLLEDKSSSFAQLVAEYTMRSKTNFQKSSNH 1428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212621g00003 1428 Pfam ABC transporter 625 675 IPR003439 GO:0005524
Stsc212621g00003 1428 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 293 573 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc212621g00003 1428 SUPERFAMILY ABC transporter transmembrane region 286 589 IPR036640 GO:0005524|GO:0016020
Stsc212621g00003 1428 Gene3D - 590 699 IPR027417 -
Stsc212621g00003 1428 Gene3D - 700 788 IPR027417 -
Stsc212621g00003 1428 Gene3D ABC transporter type 1, transmembrane domain 822 1159 IPR036640 GO:0005524|GO:0016020
Stsc212621g00003 1428 Gene3D ABC transporter type 1, transmembrane domain 271 589 IPR036640 GO:0005524|GO:0016020
Stsc212621g00003 1428 Pfam ABC transporter transmembrane region 863 1117 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc212621g00003 1428 Pfam ABC transporter transmembrane region 293 549 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc212621g00003 1428 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 861 1125 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc212621g00003 1428 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 699 1415 - -
Stsc212621g00003 1428 MobiDBLite consensus disorder prediction 796 833 - -
Stsc212621g00003 1428 Pfam ABC transporter 1195 1343 IPR003439 GO:0005524
Stsc212621g00003 1428 MobiDBLite consensus disorder prediction 801 833 - -
Stsc212621g00003 1428 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1169 1409 IPR027417 -
Stsc212621g00003 1428 Gene3D - 1161 1414 IPR027417 -
Stsc212621g00003 1428 FunFam ABC transporter C family member 3 1161 1413 - -
Stsc212621g00003 1428 SUPERFAMILY ABC transporter transmembrane region 860 1158 IPR036640 GO:0005524|GO:0016020
Stsc212621g00003 1428 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 551 760 IPR027417 -
Stsc212621g00003 1428 CDD ABC_6TM_ABCC_D2 859 1153 IPR044726 GO:0140359
Stsc212621g00003 1428 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1178 1412 IPR003439 GO:0005524
Stsc212621g00003 1428 FunFam ABC transporter C family member 10 276 589 - -
Stsc212621g00003 1428 FunFam ABC transporter C family member 5 822 1159 - -
Stsc212621g00003 1428 CDD ABCC_MRP_domain2 1176 1396 - -
Stsc212621g00003 1428 CDD ABC_6TM_ABCC_D1 294 581 IPR044746 GO:0140359
Stsc212621g00003 1428 SMART AAA_5 634 747 IPR003593 GO:0016887
Stsc212621g00003 1428 SMART AAA_5 1204 1389 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212621g00003 Stsc-Chr212621 12843 18281 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212621g00003 1176 1426 Calmodulin-binding Proteins AT2G36910 28.295 9.96e-28 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212621g00003 - K05666 aip:107606454 2434.45