Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212621g00002 ATGGATCTTCAGAACCTTTGGTTTATCCTCACCACCTTCCTCTTTCTCTTTGTGCTATTCAACTTAGTTATTAAGAAATCCACTTCTTCTAACAAGACGAATTTACCCCCAGGGCCATGGAAACTACCACTCATAGGAAATATCCACCAACTTGTTGGTTCTTCACAACTCCATGAAACCCTAAGAAACTTAGCATCCAAATATGGACCCTTAATGCACCTTAAACTAGGAGAAGTCTCCAACATCATAGTTTCTTCACCTGAAATGGCACAAGAGATTATGAAAACTCAAGATCTCAAATTTAGTGATAGGCCTCGTGAAAATCTTATTTCTAGAATTATTTGTTACAATGGCAGAGACGTTACCTTCTCTAACTATGGAGATTATTGGAGACAATTAAAAAAGATATGCACCACGGAGTTATTAACAACAAAACGTGTTCAATCTTTTAGGGCCTTGAGAGAAGAAGAGGTCTCGGAGATGGTTAAATCAATATCTGAAAGTGAAGGCTCCATTGTTAATCTCAGCAAGAAGATTTTCTCATTGACTTATGGGATAGCATCTAGGGCAGCATTTGGTAGGAGGTGTAGTTACCAGCAAGCTTTTGTATCTGCTATGGAGGAATTATTGGTGCTAGCAGGAGGATACAATGTATCTGATCTCTATCCTTCTGTTAAGGTGTTTCAAATGATGAATAAAACCAAAGCAAGGGTGGAAGAACATCACAAGAAGACTGATAAAATATTACAAGACATCATAGACGATCACAAGAATAGAAAAAGTAGCCATCACTATGATGAAGAAGCAGTTGAAGATCTAGTTGATGTTCTTCTCAAGTTTCAAAAGGACTCAGAATTTCCCTTGGATGATGACAGCATCAAAGCAGTTATTCAGGACATGTTTGTTGGTGGTGGTGAAACATCATCAGCGGTTGTGGATTGGGCAATGGCTGAAATGATAAAGAAACCAAAAGTGATGGAAGCAGCACAATCTGAAGTTAGAAGGGTTTATAGTAACAAAGGGTATGTGGATGAATCAGAATTGCACCAATTGACATACCTCAAATGCATCATCAAAGAAACATTAAGGTTACACCCATCTTTGCCTTTAGTTCCAAGAAGTAACAGAGAGACATGCCAAATCATGGGATACCATATTCCAGCTAATTGTAACATTGTGATCAATGCTTGGGCAATTGGAAGAGATCCAAGGTATTGGACTGATGCTGAGAGTTTTATGCCAGAGAGATTTCTTGATAGTTCAATTGATTACAAAGACATAAACTTTGAATTTATTCCATTCGGTGCTGGAAGAAGAATGTGTCCCGGAATTGCATTTGCTACACCAAACATGGAGCTGCCACTTGCTAAATTGCTTTACCGATTGGAGGCTTCCCAGTGGAATCAAGAATGA 1413 0.3857 MDLQNLWFILTTFLFLFVLFNLVIKKSTSSNKTNLPPGPWKLPLIGNIHQLVGSSQLHETLRNLASKYGPLMHLKLGEVSNIIVSSPEMAQEIMKTQDLKFSDRPRENLISRIICYNGRDVTFSNYGDYWRQLKKICTTELLTTKRVQSFRALREEEVSEMVKSISESEGSIVNLSKKIFSLTYGIASRAAFGRRCSYQQAFVSAMEELLVLAGGYNVSDLYPSVKVFQMMNKTKARVEEHHKKTDKILQDIIDDHKNRKSSHHYDEEAVEDLVDVLLKFQKDSEFPLDDDSIKAVIQDMFVGGGETSSAVVDWAMAEMIKKPKVMEAAQSEVRRVYSNKGYVDESELHQLTYLKCIIKETLRLHPSLPLVPRSNRETCQIMGYHIPANCNIVINAWAIGRDPRYWTDAESFMPERFLDSSIDYKDINFEFIPFGAGRRMCPGIAFATPNMELPLAKLLYRLEASQWNQE 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212621g00002 470 Gene3D Cytochrome P450 28 469 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc212621g00002 470 PRINTS E-class P450 group I signature 182 200 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc212621g00002 470 PRINTS E-class P450 group I signature 355 373 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc212621g00002 470 PRINTS E-class P450 group I signature 441 464 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc212621g00002 470 PRINTS E-class P450 group I signature 65 84 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc212621g00002 470 PRINTS E-class P450 group I signature 292 309 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc212621g00002 470 PRINTS E-class P450 group I signature 312 338 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc212621g00002 470 PRINTS E-class P450 group I signature 395 419 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc212621g00002 470 PRINTS E-class P450 group I signature 431 441 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc212621g00002 470 PRINTS E-class P450 group I signature 89 110 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc212621g00002 470 FunFam Cytochrome P450 99A2 25 468 - -
Stsc212621g00002 470 CDD CYP71-like 67 461 - -
Stsc212621g00002 470 PANTHER CYTOCHROME P450 71B11-RELATED 18 463 - -
Stsc212621g00002 470 SUPERFAMILY Cytochrome P450 36 464 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc212621g00002 470 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 434 443 IPR017972 GO:0005506|GO:0016705
Stsc212621g00002 470 PRINTS P450 superfamily signature 303 320 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc212621g00002 470 PRINTS P450 superfamily signature 432 441 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc212621g00002 470 PRINTS P450 superfamily signature 356 367 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc212621g00002 470 PRINTS P450 superfamily signature 441 452 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc212621g00002 470 Pfam Cytochrome P450 36 463 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212621g00002 Stsc-Chr212621 8097 11011 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212621g00002 26 463 Cytochrome P450 AT3G48310 41.403 2.94e-118 353
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212621g00002 - - adu:107496273 628.632