Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212607g00004 ATGGTAGTTGATAAGCTTGAAATAGGTGAAGAACAAGTTACTCAAAAGATTACTACTGCTGCTGTTGTTGCTATGGAGAGGAAGAGAAGAACCAGACATGGATCTTCTACTAAACCTCAATCTAAGGATGGAACAACAAACAAGAGAACAAGGAAGAGCAATAATGGAGGTGGTATGATGAAGAATAAAGAAGAAGAAGATGAGAAACCAAAAGCAGAGAGAATGGATAAGAATGATAGTAAGAAAAAGGGTAGCAATGAGGAAGAAGAGCCACCAAAGGGTTACATCCATGTCAGAGCAAGAAGGGGTCAAGCAACTGATAGCCACAGCCTTGCTGAAAGGGTGAGAAGAGAGAAAATAAGTGAAAGGATGAAGATGTTGCAGAGGCTTGTGCCAGGCTGTGATAAGGTGACTGGAAAGGCCCTTATGTTGGATGAAATAATCAATTATGTTCAGTCTTTACAGAATCAAGTAGAGTTCTTGTCGATGAAGCTTGCTTCAGTGAGTCCCATTTTCTATGAAATGGCAACAGATCTAGACAATAATAATACTCTCTTGGTTAAACCAGAGAAATTAAATATCCAACCTTGCCAACAAGCCACAACAACAACCACTATGGCGGCTGCGACCGTCACTGCCGCCACCACCGTTTTCCCTGCCGCGAATAATGATCACTATCTCTTGGATAGTAGTTCAGCTTCAACTTTTCTTCAAGGCCAGAGATCAAATATCTTCTCTGAGGGTAGTAGTCAATTCTGGGACACAGAAGAGCAAAGACAAAAATTTCTTCATCCATATGAATTCATAAACAACAACAACTTGTGTTCTTTTCATTAG 837 0.4038 MVVDKLEIGEEQVTQKITTAAVVAMERKRRTRHGSSTKPQSKDGTTNKRTRKSNNGGGMMKNKEEEDEKPKAERMDKNDSKKKGSNEEEEPPKGYIHVRARRGQATDSHSLAERVRREKISERMKMLQRLVPGCDKVTGKALMLDEIINYVQSLQNQVEFLSMKLASVSPIFYEMATDLDNNNTLLVKPEKLNIQPCQQATTTTTMAAATVTAATTVFPAANNDHYLLDSSSASTFLQGQRSNIFSEGSSQFWDTEEQRQKFLHPYEFINNNNLCSFH 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212607g00004 278 Gene3D - 101 171 IPR036638 GO:0046983
Stsc212607g00004 278 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 36 212 IPR024097 GO:0006355
Stsc212607g00004 278 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 102 170 IPR036638 GO:0046983
Stsc212607g00004 278 MobiDBLite consensus disorder prediction 58 112 - -
Stsc212607g00004 278 MobiDBLite consensus disorder prediction 23 112 - -
Stsc212607g00004 278 CDD bHLH_AtBPE_like 94 179 - -
Stsc212607g00004 278 Pfam Helix-loop-helix DNA-binding domain 108 155 IPR011598 GO:0046983
Stsc212607g00004 278 FunFam Basic helix-loop-helix transcription factor 101 173 - -
Stsc212607g00004 278 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 104 154 IPR011598 GO:0046983
Stsc212607g00004 278 SMART finulus 110 160 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212607g00004 Stsc-Chr212607 16913 19051 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212607g00004 3 245 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G50915 47.325 6.13e-56 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc212607g00004 HLH 1.5e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212607g00004 - - ahf:112708119 395.586