Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212598g00001 TATATGGCTTATATTATGGATACAAAGGAGGAGGAGAGAATAAAGGGAAAGACAGTTGAAGTTGGAAGAGCACATTTTGAAACAGAGACAACAAGGTTTACAATTCTGGATGCACCTGGTCACAAAAGTTATGTACGTAACATGATCAGTGGTGCTTCTCAGGCTGATATTGGAGTGTTGGTAATTTCAGCTCGAAAGGGAGAATTTGAAACAGGATATGAGAGAGGTGGACAAACTCGTGAACATGTCCAGCTCGCAAAAACATTGGGGGTGGCTAAATTGCTTGTTGTTGTCAATAAAATGGATGAGCCTACTGTTCAATGGTCTAAATAA 333 0.3994 YMAYIMDTKEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVRNMISGASQADIGVLVISARKGEFETGYERGGQTREHVQLAKTLGVAKLLVVVNKMDEPTVQWSK 110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212598g00001 110 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 7 22 IPR031157 -
Stsc212598g00001 110 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 1 110 IPR000795 GO:0003924|GO:0005525
Stsc212598g00001 110 PANTHER TRANSLATION FACTOR 1 110 - -
Stsc212598g00001 110 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 108 IPR027417 -
Stsc212598g00001 110 Pfam Elongation factor Tu GTP binding domain 5 104 IPR000795 GO:0003924|GO:0005525
Stsc212598g00001 110 Gene3D - 1 110 IPR027417 -
Stsc212598g00001 110 PRINTS GTP-binding elongation factor signature 50 61 IPR000795 GO:0003924|GO:0005525
Stsc212598g00001 110 PRINTS GTP-binding elongation factor signature 14 22 IPR000795 GO:0003924|GO:0005525
Stsc212598g00001 110 PRINTS GTP-binding elongation factor signature 94 103 IPR000795 GO:0003924|GO:0005525
Stsc212598g00001 110 PRINTS GTP-binding elongation factor signature 34 44 IPR000795 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212598g00001 Stsc-Chr212598 385 1430 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212598g00001 3 110 Eukaryotic Initiation Factors Gene Family AT1G07930 45.370 2.80e-30 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212598g00001 K03267 - gmx:100793653 214.157