Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Stsc212564g00004 | ATGGAAGACGAAATGTACGGAGTTCCGCCATCATCGACCACGGTGTACTCAGACAGGGCGCCGTTGACGCCGGACAACATAATATTCCCGGTTGAGTACCATAGCTTTCTCATGTCCACCGGCGCTCGGATTCCTGTGTTCGGATCCGACGAGCTTCTCTCGGCTGCGGCCTCCGCCGTAACGGCCATCACAGAAGCGGAACCCTCCTCGAACGTGATGGTGCCCGAAATCCTTGAGCGGCACCAGCAGGACGCTGCTTCTGCTTGCTGTCACATGAAGGCGAAAATCGCTTCTCACCCTTACTACCCTCGCCTCCTCCAAGCCTACATCGATTGCCAAAAGGTGGGAGCGCCCCCAGAGATAGCAAGGTTGTTAGAGGAAATACAGCGAGAAAACGACGTTTGCAAGGGGGACGTGAGTTCCACGTGCATAGGAGCCGATCCCGAGCTGGACGAGTTCATGGAAACATACTGTGAGATGCTGGTGAAGTATAAGTGCGATCTGAGTCGGCCTTTCGAAGAAGCCAGCAGCTTCCTCAACAAGATCGAAACGCAGCTCAGCGATCTCTGCTGCACAGGTGCTTCCGCTCCAGCACCCCTTTCCGATGATGATGGGGGTGCATCATCGGAGGAATATTTAAGTGGTGGCGGTGGTGGTGGAGATGCTGAGTTTCAAGAGGGACAATCACAAACACAATCACGGGTTGAAGATCGCGATCTGAAGGATAAGCTGTTACGCAGGNNNNNNNNNNTTAGTTCATTGAAATTGGAGTTCTCAAAGAAGAAAAAAAGGGGCAAGCTACCCAAAGACGCTAGGCAAAGTCTCCTTCACTGGTGGAATAATCATTACAAATGGCCCTATCCAACGGAAGCTGATAAGGTATCACTGGCGAAGTCGACAGGGCTAGATCAGAAGCAAATTAACAATTGGTTTATTAATCAAAGAAAGCGTCATTGGAAACCATCAGAGAACATGCACTTTAATTTCTACGATGGATAA | 999 | 0.5025 | MEDEMYGVPPSSTTVYSDRAPLTPDNIIFPVEYHSFLMSTGARIPVFGSDELLSAAASAVTAITEAEPSSNVMVPEILERHQQDAASACCHMKAKIASHPYYPRLLQAYIDCQKVGAPPEIARLLEEIQRENDVCKGDVSSTCIGADPELDEFMETYCEMLVKYKCDLSRPFEEASSFLNKIETQLSDLCCTGASAPAPLSDDDGGASSEEYLSGGGGGGDAEFQEGQSQTQSRVEDRDLKDKLLRRXXXXSSLKLEFSKKKKRGKLPKDARQSLLHWWNNHYKWPYPTEADKVSLAKSTGLDQKQINNWFINQRKRHWKPSENMHFNFYDG | 332 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Stsc212564g00004 | 332 | SMART | KNOX1_2 | 90 | 134 | IPR005540 | GO:0003677|GO:0005634 | |
| Stsc212564g00004 | 332 | Pfam | KNOX1 domain | 92 | 133 | IPR005540 | GO:0003677|GO:0005634 | |
| Stsc212564g00004 | 332 | ProSiteProfiles | 'Homeobox' domain profile. | 258 | 321 | IPR001356 | GO:0003677 | |
| Stsc212564g00004 | 332 | Pfam | KNOX2 domain | 143 | 190 | IPR005541 | GO:0003677|GO:0005634 | |
| Stsc212564g00004 | 332 | SUPERFAMILY | Homeodomain-like | 259 | 328 | IPR009057 | - | |
| Stsc212564g00004 | 332 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 94 | 328 | - | - | |
| Stsc212564g00004 | 332 | SMART | HOX_1 | 260 | 325 | IPR001356 | GO:0003677 | |
| Stsc212564g00004 | 332 | MobiDBLite | consensus disorder prediction | 200 | 241 | - | - | |
| Stsc212564g00004 | 332 | ProSitePatterns | 'Homeobox' domain signature. | 296 | 319 | IPR017970 | GO:0000981|GO:0006355 | |
| Stsc212564g00004 | 332 | SMART | KNOX2_2 | 140 | 191 | IPR005541 | GO:0003677|GO:0005634 | |
| Stsc212564g00004 | 332 | Pfam | Homeobox KN domain | 278 | 317 | IPR008422 | GO:0003677|GO:0006355 | |
| Stsc212564g00004 | 332 | Gene3D | - | 263 | 324 | - | - | |
| Stsc212564g00004 | 332 | CDD | homeodomain | 270 | 322 | IPR001356 | GO:0003677 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Stsc212564g00004 | Stsc-Chr212564 | 6554 | 12563 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Stsc212564g00004 | 3 | 331 | Homeobox Transcription Factor Family | AT1G23380 | 60.355 | 1.32e-117 | 341 |
Transcription factors information