Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212564g00004 ATGGAAGACGAAATGTACGGAGTTCCGCCATCATCGACCACGGTGTACTCAGACAGGGCGCCGTTGACGCCGGACAACATAATATTCCCGGTTGAGTACCATAGCTTTCTCATGTCCACCGGCGCTCGGATTCCTGTGTTCGGATCCGACGAGCTTCTCTCGGCTGCGGCCTCCGCCGTAACGGCCATCACAGAAGCGGAACCCTCCTCGAACGTGATGGTGCCCGAAATCCTTGAGCGGCACCAGCAGGACGCTGCTTCTGCTTGCTGTCACATGAAGGCGAAAATCGCTTCTCACCCTTACTACCCTCGCCTCCTCCAAGCCTACATCGATTGCCAAAAGGTGGGAGCGCCCCCAGAGATAGCAAGGTTGTTAGAGGAAATACAGCGAGAAAACGACGTTTGCAAGGGGGACGTGAGTTCCACGTGCATAGGAGCCGATCCCGAGCTGGACGAGTTCATGGAAACATACTGTGAGATGCTGGTGAAGTATAAGTGCGATCTGAGTCGGCCTTTCGAAGAAGCCAGCAGCTTCCTCAACAAGATCGAAACGCAGCTCAGCGATCTCTGCTGCACAGGTGCTTCCGCTCCAGCACCCCTTTCCGATGATGATGGGGGTGCATCATCGGAGGAATATTTAAGTGGTGGCGGTGGTGGTGGAGATGCTGAGTTTCAAGAGGGACAATCACAAACACAATCACGGGTTGAAGATCGCGATCTGAAGGATAAGCTGTTACGCAGGNNNNNNNNNNTTAGTTCATTGAAATTGGAGTTCTCAAAGAAGAAAAAAAGGGGCAAGCTACCCAAAGACGCTAGGCAAAGTCTCCTTCACTGGTGGAATAATCATTACAAATGGCCCTATCCAACGGAAGCTGATAAGGTATCACTGGCGAAGTCGACAGGGCTAGATCAGAAGCAAATTAACAATTGGTTTATTAATCAAAGAAAGCGTCATTGGAAACCATCAGAGAACATGCACTTTAATTTCTACGATGGATAA 999 0.5025 MEDEMYGVPPSSTTVYSDRAPLTPDNIIFPVEYHSFLMSTGARIPVFGSDELLSAAASAVTAITEAEPSSNVMVPEILERHQQDAASACCHMKAKIASHPYYPRLLQAYIDCQKVGAPPEIARLLEEIQRENDVCKGDVSSTCIGADPELDEFMETYCEMLVKYKCDLSRPFEEASSFLNKIETQLSDLCCTGASAPAPLSDDDGGASSEEYLSGGGGGGDAEFQEGQSQTQSRVEDRDLKDKLLRRXXXXSSLKLEFSKKKKRGKLPKDARQSLLHWWNNHYKWPYPTEADKVSLAKSTGLDQKQINNWFINQRKRHWKPSENMHFNFYDG 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212564g00004 332 SMART KNOX1_2 90 134 IPR005540 GO:0003677|GO:0005634
Stsc212564g00004 332 Pfam KNOX1 domain 92 133 IPR005540 GO:0003677|GO:0005634
Stsc212564g00004 332 ProSiteProfiles 'Homeobox' domain profile. 258 321 IPR001356 GO:0003677
Stsc212564g00004 332 Pfam KNOX2 domain 143 190 IPR005541 GO:0003677|GO:0005634
Stsc212564g00004 332 SUPERFAMILY Homeodomain-like 259 328 IPR009057 -
Stsc212564g00004 332 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 94 328 - -
Stsc212564g00004 332 SMART HOX_1 260 325 IPR001356 GO:0003677
Stsc212564g00004 332 MobiDBLite consensus disorder prediction 200 241 - -
Stsc212564g00004 332 ProSitePatterns 'Homeobox' domain signature. 296 319 IPR017970 GO:0000981|GO:0006355
Stsc212564g00004 332 SMART KNOX2_2 140 191 IPR005541 GO:0003677|GO:0005634
Stsc212564g00004 332 Pfam Homeobox KN domain 278 317 IPR008422 GO:0003677|GO:0006355
Stsc212564g00004 332 Gene3D - 263 324 - -
Stsc212564g00004 332 CDD homeodomain 270 322 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212564g00004 Stsc-Chr212564 6554 12563 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212564g00004 3 331 Homeobox Transcription Factor Family AT1G23380 60.355 1.32e-117 341
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Stsc212564g00004 KNOX2 2.1e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212564g00004 - - adu:107481351 538.11