LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc212564g00003	ATGAAAGTCCCAACAATGGAGAAGAAACTAGTCTCTCTTGTCTATCCCCAGATCCTTGTTTTCCTCCTCATCAAATCTCTGTTACTGTTAGATTCAGTGGTAGCAGAACCAAGGGCCAAAACAATTGAAGTAACATGTGGCAATCAACTAGAGCACAACGCTACCATCTTTGTTCCAAATTTCATTGCAACCATGGTGAAGATAAGCCAACAAATGAGCAGCAACGGCTATGGCACAGCAGTTACAGGGACAGGACCAGACATAAACTATGGCTTGGCACAGTGCTATGGAGATCTTTCACTTCTTGATTGTGTGCTATGTTATGCTGAGGCGCGAACCGTTCTTCCTAAATGCTTCCCATACAATAGTGGCCGCATATTTCTTGATGGATGCTTCATGAGGTCTGAAAACTATAGCTTCTTTGATGAGTATGCAGGGCCAGGGGACAAGGCTGTTTGTGGTAACACAACAAGGAAGAACTCGAGTTTTCGAGCAGCTGCGAAACAAGCAGTTTTGGAAGTAGTTCAAGCTGCACCAAACAACAAAGGATACTATGCAAGAGGGAAGGTTGATGTTTCTGGAAGTGTAAATGAATCTGCTTATGTTTTGGCTAATTGTTGGAGGAGTTTGAACACAAGTTCTTGCAAAGCATGCCTTGAGAATGCTTCTAAATCTGTTTTGGGATGCTTGCCTTATTCAGAAGGTAGAGCACTGAACACTGGTTGCTTCATGAGGTACTCTGACACAGATTTTCTTAACAAGGAACAGAATAATGGAAGATCAAGAGGTACTCTTATAGCGATAGTGGTTGCAGTAGTTAGTGCAGTGATTGTTTTGGTAGTTGGAATAGCTATTGGGGTCTATATAAGGAAACATAGATACATTCAAAAAAAAAGAAGAGGTTCAAATGATGCAGAAAAGTTGGCTAAGGCACTTCACCACAACAGCTTGAATTTCAAGTACTCTACACTGGAGAAGGCTACAGAATCCTTCAACGAAGCGAACAAGCTTGGACAAGGAGGATTCGGATCGGTTTATAGAGGTGTTCTTCCTGATGGAAGAGAAATTGCAATCAAGAGGTTGTACTTCAACAACAGGCATAGAGCAGCAGATTTCTACAATGAAGTAAACATAATTAGTAGCGTGGAGCACAAGAATCTAGTGAGGTTGTTAGGATGCAGCTGTTCTGGACCCGAAAGCTTGCTCGTATATGAGTTTCTACCAAACAAAAGTCTTGATCAATTTATTTTTGATAGTGTCAAGGGAAGAGAACTAAACTGGGAGAAGAGATATGACATTATCATTGGGACAGCTGAAGGATTGGTTTACCTGCATGAAAACTCAAAAACTAGGATAATTCACCGAGATATAAAAGCTAGCAACATCTTATTGGATGCTAAACTCCGCGCCAAGATTGCTGATTTCGGGCTGGCCAGGTCCTTTCAAGAAGATAAGAGTCACATTAGCACGGCTATAGCCGGAACTCTGGGTTACATGGCTCCAGAGTACCTAGCTCATGGTCAGTTAACAGAAAAGGCAGATGTATACAGTTTTGGAGTGTTAGTCCTAGAAATAGTTACTGGGAGACAGAATAACAGAAGCAAATCAACAGAATACACAGACAGCATAGTTATACTGGTATGTTTCTCAACAATTAACTAA	1662	0.4134	MKVPTMEKKLVSLVYPQILVFLLIKSLLLLDSVVAEPRAKTIEVTCGNQLEHNATIFVPNFIATMVKISQQMSSNGYGTAVTGTGPDINYGLAQCYGDLSLLDCVLCYAEARTVLPKCFPYNSGRIFLDGCFMRSENYSFFDEYAGPGDKAVCGNTTRKNSSFRAAAKQAVLEVVQAAPNNKGYYARGKVDVSGSVNESAYVLANCWRSLNTSSCKACLENASKSVLGCLPYSEGRALNTGCFMRYSDTDFLNKEQNNGRSRGTLIAIVVAVVSAVIVLVVGIAIGVYIRKHRYIQKKRRGSNDAEKLAKALHHNSLNFKYSTLEKATESFNEANKLGQGGFGSVYRGVLPDGREIAIKRLYFNNRHRAADFYNEVNIISSVEHKNLVRLLGCSCSGPESLLVYEFLPNKSLDQFIFDSVKGRELNWEKRYDIIIGTAEGLVYLHENSKTRIIHRDIKASNILLDAKLRAKIADFGLARSFQEDKSHISTAIAGTLGYMAPEYLAHGQLTEKADVYSFGVLVLEIVTGRQNNRSKSTEYTDSIVILVCFSTIN	553

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc212564g00003	553	FunFam	Cysteine-rich receptor-like protein kinase 2	407	550	-	-
	Stsc212564g00003	553	ProSitePatterns	Protein kinases ATP-binding region signature.	337	359	IPR017441	GO:0005524
	Stsc212564g00003	553	FunFam	Putative DUF26-domain receptor-like protein kinase family protein	299	406	-	-
	Stsc212564g00003	553	ProSiteProfiles	Protein kinase domain profile.	331	553	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc212564g00003	553	Gene3D	-	150	251	IPR038408	-
	Stsc212564g00003	553	Gene3D	-	39	140	IPR038408	-
	Stsc212564g00003	553	Pfam	Salt stress response/antifungal	153	248	IPR002902	-
	Stsc212564g00003	553	Pfam	Salt stress response/antifungal	57	138	IPR002902	-
	Stsc212564g00003	553	FunFam	Cysteine-rich receptor-like protein kinase 3	149	251	-	-
	Stsc212564g00003	553	Gene3D	Transferase(Phosphotransferase) domain 1	407	547	-	-
	Stsc212564g00003	553	ProSiteProfiles	Gnk2-homologous domain profile.	145	251	IPR002902	-
	Stsc212564g00003	553	FunFam	Cysteine-rich receptor-like protein kinase 2	39	140	-	-
	Stsc212564g00003	553	SUPERFAMILY	Protein kinase-like (PK-like)	314	536	IPR011009	-
	Stsc212564g00003	553	ProSiteProfiles	Gnk2-homologous domain profile.	39	140	IPR002902	-
	Stsc212564g00003	553	PANTHER	CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3	90	538	-	-
	Stsc212564g00003	553	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	452	464	IPR008271	GO:0004672\|GO:0006468
	Stsc212564g00003	553	SMART	serkin_6	331	545	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc212564g00003	553	Pfam	Protein tyrosine and serine/threonine kinase	334	532	IPR001245	GO:0004672\|GO:0006468
	Stsc212564g00003	553	Gene3D	Phosphorylase Kinase; domain 1	291	406	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc212564g00003	Stsc-Chr212564	2865	5836	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc212564g00003	10	544	Receptor kinase-like Gene Family	AT1G70520	68.843	0.0	747

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Stsc212564g00003		PK_Tyr_Ser-Thr	1.8e-45	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc212564g00003	-		-	aip:107631343	1002.66