Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212564g00002 ATGAAAGTCCCAACAATGGAGAAGAAACTAGTCTCTCTTGTCTATCCCCAGATCCTTGTTTTCCTCCTCATCAAATCTCTGTTACTGTTAGATTCAGTGGTAGCAGAACCAAGGGCCAAAACAATTGAAGTAACATGTGGCAATCAACTAGAGCACAACGCTACCATCTTTGTTCCAAATTTCATTGCAACCATGGTGAAGATAAGCCAACAAATGAGCAGCAACGGCTATGGCACAGCAGTTACAGGGACAGGACCAGACATAAACTATGGCTTGGCACAGTGCTATGGAGATCTTTCACTTCTTGATTGTGTGCTATGTTATGCTGAGGCGCGAACCGTTCTTCCTAAATGCTTCCCATACAATAGTGGCCGCATATTTCTTGATGGATGCTTCATGAGGTCTGAAAACTATAGCTTCTTTGATGAGTATGCAGGGCCAGGGGACAAGGCTGTTTGTGGTAACACAACAAGGAAGAACTCGAGTTTTCGAGCAGCTGCGAAACAAGCAGTTTTGGAAGTAGTTCAAGCTGCACCAAACAACAAAGGATACTATGCAAGAGGGAAGGTTGATGTTTCTGGAAGTGTAAATGAATCTGCTTATGTTTTGGCTAATTGTTGGAGGAGTTTGAACACAAGTTCTTGCAAAGCATGCCTTGAGAATGCTTCTAAATCTGTTTTGGGATGCTTGCCTTATTCAGAAGGTAGAGCACTGAACACTGGTTGCTTCATGAGGTACTCTGACACAGATTTTCTTAACAAGGAACAGAATAATGGAAGATCAAGAGGTACTCTTATAGCGATAGTGGTTGCAGTAGTTAGTGCAGTGATTGTTTTGGTAGTTGGAATAGCTATTGGGGTCTATATAAGGAAACATAGATACATTCAAAAAAAAAGAAGAGGTTCAAATGATGCAGAAAAGTTGGCTAAGGCACTTCACCACAACAGCTTGAATTTCAAGTACTCTACACTGGAGAAGGCTACAGAATCCTTCAACGAAGCGAACAAGCTTGGACAAGGAGGATTCGGATCGGTTTATAGAGGTGTTCTTCCTGATGGAAGAGAAATTGCAATCAAGAGGTTGTACTTCAACAACAGGCATAGAGCAGCAGATTTCTACAATGAAGTAAACATAATTAGTAGCGTGGAGCACAAGAATCTAGTGAGGTTGTTAGGATGCAGCTGTTCTGGACCCGAAAGCTTGCTCGTATATGAGTTTCTACCAAACAAAAGTCTTGATCAATTTATTTTTGATAGTGTCAAGGGAAGAGAACTAAACTGGGAGAAGAGATATGACATTATCATTGGGACAGCTGAAGGATTGGTTTACCTGCATGAAAACTCAAAAACTAGGATAATTCACCGAGATATAAAAGCTAGCAACATCTTATTGGATGCTAAACTCCGCGCCAAGATTGCTGATTTCGGGCTGGCCAGGTCCTTTCAAGAAGATAAGAGTCACATTAGCACGGCTATAGCCGGAACTCTGGGTTACATGGCTCCAGAGTACCTAGCTCATGGTCAGTTAACAGAAAAGGCAGATGTATACAGTTTTGGAGTGTTAGTCCTAGAAATAGTTACTGGGAGACAGAATAACAGAAGCAAATCAACAGAATACACAGACAGCATAGTTATACTGACATGGAGGCATTTCCAATCAGGGACAGCAGAAGAACTATTTGATCCAAATCTAGTTTCAGATGATGACAACAACAATGATATTGTTAACAAGAAGGATGAGATTTTGAGAGTGGTGCAGATAGGACTTCTATGCACACAAGAGAACCCTTCCTTAAGGCCAACCATGTCAAGGGCACTACAGATGCTAACAAAGAAGGAGGAGAATCTTGCACGTCCCTCAAATCCACCCTTCACAGATGAGAGCACAATGGAACTCAATGACACTGTTGATAATTCATTTTCCCCTCTCAATAATGCAACATATTCATCAGATGCTACTATGTCCCATAGTTCTTTCTATGCAAGGTGA 1989 0.4148 MKVPTMEKKLVSLVYPQILVFLLIKSLLLLDSVVAEPRAKTIEVTCGNQLEHNATIFVPNFIATMVKISQQMSSNGYGTAVTGTGPDINYGLAQCYGDLSLLDCVLCYAEARTVLPKCFPYNSGRIFLDGCFMRSENYSFFDEYAGPGDKAVCGNTTRKNSSFRAAAKQAVLEVVQAAPNNKGYYARGKVDVSGSVNESAYVLANCWRSLNTSSCKACLENASKSVLGCLPYSEGRALNTGCFMRYSDTDFLNKEQNNGRSRGTLIAIVVAVVSAVIVLVVGIAIGVYIRKHRYIQKKRRGSNDAEKLAKALHHNSLNFKYSTLEKATESFNEANKLGQGGFGSVYRGVLPDGREIAIKRLYFNNRHRAADFYNEVNIISSVEHKNLVRLLGCSCSGPESLLVYEFLPNKSLDQFIFDSVKGRELNWEKRYDIIIGTAEGLVYLHENSKTRIIHRDIKASNILLDAKLRAKIADFGLARSFQEDKSHISTAIAGTLGYMAPEYLAHGQLTEKADVYSFGVLVLEIVTGRQNNRSKSTEYTDSIVILTWRHFQSGTAEELFDPNLVSDDDNNNDIVNKKDEILRVVQIGLLCTQENPSLRPTMSRALQMLTKKEENLARPSNPPFTDESTMELNDTVDNSFSPLNNATYSSDATMSHSSFYAR 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212564g00002 662 ProSiteProfiles Protein kinase domain profile. 331 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc212564g00002 662 Pfam Protein tyrosine and serine/threonine kinase 334 607 IPR001245 GO:0004672|GO:0006468
Stsc212564g00002 662 ProSitePatterns Protein kinases ATP-binding region signature. 337 359 IPR017441 GO:0005524
Stsc212564g00002 662 FunFam Putative DUF26-domain receptor-like protein kinase family protein 299 406 - -
Stsc212564g00002 662 Pfam Salt stress response/antifungal 153 248 IPR002902 -
Stsc212564g00002 662 Pfam Salt stress response/antifungal 57 138 IPR002902 -
Stsc212564g00002 662 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 90 638 - -
Stsc212564g00002 662 ProSiteProfiles Gnk2-homologous domain profile. 145 251 IPR002902 -
Stsc212564g00002 662 Gene3D Transferase(Phosphotransferase) domain 1 407 620 - -
Stsc212564g00002 662 CDD STKc_IRAK 337 611 - -
Stsc212564g00002 662 Gene3D - 150 251 IPR038408 -
Stsc212564g00002 662 Gene3D - 39 140 IPR038408 -
Stsc212564g00002 662 ProSiteProfiles Gnk2-homologous domain profile. 39 140 IPR002902 -
Stsc212564g00002 662 SMART serkin_6 331 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc212564g00002 662 FunFam Cysteine-rich receptor-like protein kinase 3 149 251 - -
Stsc212564g00002 662 FunFam Cysteine-rich receptor-like protein kinase 2 407 617 - -
Stsc212564g00002 662 ProSitePatterns Serine/Threonine protein kinases active-site signature. 452 464 IPR008271 GO:0004672|GO:0006468
Stsc212564g00002 662 FunFam Cysteine-rich receptor-like protein kinase 2 39 140 - -
Stsc212564g00002 662 Gene3D Phosphorylase Kinase; domain 1 291 406 - -
Stsc212564g00002 662 SUPERFAMILY Protein kinase-like (PK-like) 316 632 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212564g00002 Stsc-Chr212564 2509 5782 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212564g00002 10 662 Receptor kinase-like Gene Family AT1G70520 66.208 0.0 865
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc212564g00002 PK_Tyr_Ser-Thr 2.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212564g00002 - - aip:107631343 1207.59