Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212564g00001 ATGGCCTATCTTCATGAGGAGTCACATGTAAGAATCATTCATAGAGACATAAAATTAAGCAACATTCTGCTAGACAATGACTTCACACCCAAGATTGCGGATTTTGGACTTGCCAGATTGTTTCCGGAAGATAAGTCTCACATTAGCACAGCCATTGCTGGCACACTCGGTTATATGGCTCCTGAATATGTAGTTCGTGGGAAGTTGACTGAGAAAGCAGACGTTTTCAGTTTTGGAGTTCTAGTCGTTGAAATTGTTTCTGGCAAAAAGAACACCTCCTTCATCACAAGTTCATCCTCTATCTTACAAACGTTGTGGAGCCTTTTCGGAACAAATAGGCTACCCGAAATCGTTGATCCAGCCCTAGAGGGTAACTTCCCTTCAGAGGAAGCATGCAGACTGTTGCAGATAGGGTTGCTTTGCGCGCAAGCATCTGCAGAGCTGAGACCAGCAATGTCAGCTGTTGTTCAAATGATTAACAACAGCCACGAAATTCCTCAGCCGACACAACCACCATTTCTTAGTTCAAGTTCTTCAGAAATCAGCAAATCAAGTTTGCCTGGATATAATTTTCAACCAGGATCCATGACTCAGTCTTCAGGGGACAGCATGACAGAGAGTCTTATTTTGCCTAGATGA 639 0.4335 MAYLHEESHVRIIHRDIKLSNILLDNDFTPKIADFGLARLFPEDKSHISTAIAGTLGYMAPEYVVRGKLTEKADVFSFGVLVVEIVSGKKNTSFITSSSSILQTLWSLFGTNRLPEIVDPALEGNFPSEEACRLLQIGLLCAQASAELRPAMSAVVQMINNSHEIPQPTQPPFLSSSSSEISKSSLPGYNFQPGSMTQSSGDSMTESLILPR 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212564g00001 212 SMART serkin_6 1 152 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc212564g00001 212 MobiDBLite consensus disorder prediction 166 212 - -
Stsc212564g00001 212 FunFam Cysteine-rich receptor-like protein kinase 2 1 167 - -
Stsc212564g00001 212 ProSiteProfiles Protein kinase domain profile. 1 174 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc212564g00001 212 Gene3D Transferase(Phosphotransferase) domain 1 1 170 - -
Stsc212564g00001 212 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 1 194 - -
Stsc212564g00001 212 SUPERFAMILY Protein kinase-like (PK-like) 1 193 IPR011009 -
Stsc212564g00001 212 Pfam Protein kinase domain 1 119 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc212564g00001 212 MobiDBLite consensus disorder prediction 166 206 - -
Stsc212564g00001 212 ProSitePatterns Serine/Threonine protein kinases active-site signature. 12 24 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212564g00001 Stsc-Chr212564 141 1409 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212564g00001 1 185 Receptor kinase-like Gene Family AT1G70520 52.577 5.69e-60 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc212564g00001 Pkinase 7.9e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212564g00001 - - gmx:100305402 336.265