Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212558g00003 ATGCTCTTACTTGGATTGAAATACTCCATCAAGTGCTTGTTGCTTCTAGATTTGGTTCAAAGCAAGGGGCCTTACGAAGAGAAGCCCTTAGCAAGGGAAGGGATTCTATGGCTGCTATGGATCAATTTACAAAGCAAGGGATTCTATGGCTATGGATCAATTTACAAAGAAAGGGATATAAGGACATCAGAGATGGTTGCTACCAAAGTCATATCATTATCTGAAGGGTGTTTCCAAATTCCAAAATTGATTTTCTTTCCTGTGTTTCTCCCATTGTCAGCATCAACACATGATCAAGATGTCTTTAGTTTCTTCCCTGATGATAGCTTCTGCAATGGATTTGAGCAAGTTTTGTCAAAATACAGAGAAATTATTCCTCATCTCAAACTAGCAGGACCCACTTCTTTTGCCCCTGTCATTGAGATGGCAATGACTATTGTTGAGCAAAGTGGTGGCCAATATCATGTCTTGCTAATAATTGCTGATGGACAGGGGATCGGAGCCAAAGAGAACAGAAGAGTTGGTCTTAAGTATCTTGCCTTGTACACTAAACTACATTCAAGATTTTGA 570 0.3965 MLLLGLKYSIKCLLLLDLVQSKGPYEEKPLAREGILWLLWINLQSKGFYGYGSIYKERDIRTSEMVATKVISLSEGCFQIPKLIFFPVFLPLSASTHDQDVFSFFPDDSFCNGFEQVLSKYREIIPHLKLAGPTSFAPVIEMAMTIVEQSGGQYHVLLIIADGQGIGAKENRRVGLKYLALYTKLHSRF 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212558g00003 189 PANTHER COPINE FAMILY PROTEIN 1 87 165 - -
Stsc212558g00003 189 Pfam Copine 90 165 IPR010734 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212558g00003 Stsc-Chr212558 7176 11408 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212558g00003 43 76 MAP Kinase Kinase Kinase Kinase AT1G69220 60.000 6.60e-06 43.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212558g00003 K16280 - oeu:111392477 140.198