Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212556g00002 ATGGGAGGATGTTGCAGCCATGAGCTTGGTGGTCTTCAAGGAAGGATTGAGATAAGCGAGTTGGAAGATGAACATGAACTTGAGTTTGGGAGCAATGACATAGAATATGGTTATGGTGGTGAAATTATAAGGCTAAAAGGGTGCTCTAGATTTGTTACAATGTATAGCCAACAGGGTAAGAAAGGTGTCAATCAAGATTCTATGACTGTTTGGGAGGATTATACTGGAGAAAAAGACATGATCTTCTGTGGTGTTTTTGATGGGCATGGTCCTCTAGGCCACAAAGTTTCGCAATATATCCGCGATAATCTACCTTCGAAGCGCTCTGCAGCAATCAAATTAGCACAACAAAAGGCCAACAATTATTATGATGATACTGATGCAGATACAAGCACATTTGGTGATACTAATAACCAGCAAAACATGTCCCTTGCTTCCTGGGAAGGATGCTTTATCAAGACATTCAAGGAAATGGATGACTACTCACTAAGGACATTAACACCGACAGCTATTGTAGCGGTTGCACTGCCGTTACGGTGA 540 0.4167 MGGCCSHELGGLQGRIEISELEDEHELEFGSNDIEYGYGGEIIRLKGCSRFVTMYSQQGKKGVNQDSMTVWEDYTGEKDMIFCGVFDGHGPLGHKVSQYIRDNLPSKRSAAIKLAQQKANNYYDDTDADTSTFGDTNNQQNMSLASWEGCFIKTFKEMDDYSLRTLTPTAIVAVALPLR 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212556g00002 179 SUPERFAMILY PP2C-like 48 115 IPR036457 -
Stsc212556g00002 179 Gene3D - 46 175 IPR036457 -
Stsc212556g00002 179 ProSiteProfiles PPM-type phosphatase domain profile. 51 179 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212556g00002 Stsc-Chr212556 3180 4475 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212556g00002 1 159 PP2C-type Phosphatase Gene Family AT5G01700 36.478 7.27e-30 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212556g00002 - - gmx:100783603 221.476