Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212524g00004 ATGCCCCGAGCCAGACCCACCGATCCACCAACCAAAGCACCATCATCGCTAAACCCTAACGAGCCCGCAACTCAAACCCGCTTTCGCGGCGTCCGAAAGAGACCATGGGGCCGCTTCGCCGCCGAGATCAGAGACCCATGGAAGAAATCCCGCGTCTGGCTTGGCACCTTCGATACCGCCGAGGCCGCAGCCCGGGCCTACGACGCTGCCGCCCGCTCCTTCCGCGGGCCCAAAGCCAAGACCAACTTCCCCCTCCCCGGCCCACCCGAGCCCGCCTCCGATCTTATCCTCTCCAAGTTCGATCCCGTCCAGGCCAGCCGCCCCACCAGCAGCGGCATGAGCAGCACTGTCGAGTCCTTCAGCGGCCCTAGGGTTTCCAACCCTCTCCCATCGATGGTCCACCGAAGGCCCGTGAACCCCGTTGCACTCGAAGATTGCCACAGCGACTGCGACTCCTCGTCCTCCGTCGTCGACGACGATGATGACTGCGTCCTTACCTCTTCGTTCCGCCGCAAGCCTCTACCTTTCGATCTGAACCTCCCCGCGCTGGAGGCCGACGATGCTTCAACCGGCGGAGATCTCGCCGCCGATGAGCTTTGCGTCACTGCGCTGCGCCTCTAA 621 0.6409 MPRARPTDPPTKAPSSLNPNEPATQTRFRGVRKRPWGRFAAEIRDPWKKSRVWLGTFDTAEAAARAYDAAARSFRGPKAKTNFPLPGPPEPASDLILSKFDPVQASRPTSSGMSSTVESFSGPRVSNPLPSMVHRRPVNPVALEDCHSDCDSSSSVVDDDDDCVLTSSFRRKPLPFDLNLPALEADDASTGGDLAADELCVTALRL 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212524g00004 206 CDD AP2 26 84 IPR001471 GO:0003700|GO:0006355
Stsc212524g00004 206 MobiDBLite consensus disorder prediction 105 126 - -
Stsc212524g00004 206 Pfam AP2 domain 26 76 IPR001471 GO:0003700|GO:0006355
Stsc212524g00004 206 SUPERFAMILY DNA-binding domain 27 85 IPR016177 GO:0003677
Stsc212524g00004 206 SMART rav1_2 27 90 IPR001471 GO:0003700|GO:0006355
Stsc212524g00004 206 Gene3D AP2/ERF domain 26 85 IPR036955 GO:0003700|GO:0006355
Stsc212524g00004 206 FunFam Ethylene-responsive transcription factor 2 26 85 - -
Stsc212524g00004 206 MobiDBLite consensus disorder prediction 105 130 - -
Stsc212524g00004 206 PRINTS Ethylene responsive element binding protein signature 28 39 IPR001471 GO:0003700|GO:0006355
Stsc212524g00004 206 PRINTS Ethylene responsive element binding protein signature 50 66 IPR001471 GO:0003700|GO:0006355
Stsc212524g00004 206 MobiDBLite consensus disorder prediction 1 16 - -
Stsc212524g00004 206 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 19 163 - -
Stsc212524g00004 206 ProSiteProfiles AP2/ERF domain profile. 27 84 IPR001471 GO:0003700|GO:0006355
Stsc212524g00004 206 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212524g00004 Stsc-Chr212524 17829 19072 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212524g00004 20 206 AP2-EREBP Transcription Factor Family AT1G50640 50.476 1.39e-41 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc212524g00004 AP2 1.4e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212524g00004 K09286 - qsa:O6P43_014526 211.46