Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212519g00004 ATGCAATGCACTTTGAACTTCTCATCAAGATTATTATCCTCTTGCTCCAATAAAAGGCACATGCCAAAAATAGTTGAGAGTGGAAATGAAGGCATGGAATCAACAAATTGTGTTGATAGTAATAATAATAACAATAATATCCCAAGATTCACTACTACTGACTTTTGGGATGTTTCTGCATTCAATAATTCCTCCAAAATAAGCACTACCAATGGTGCTGAAATCATGTTTTCCACTTCAAATAATGCTATTCAAGCTCAGGATGTAGATTTTGGATATGAGAAGTTTGGTTTGAGGCACCATTTAAGTCTACCTAGTTCTTCTACCAAGATTGGTGGCATGGAAAAGCTTTTTCAAATTCAAGGATCTTCTGCTCCATGTAAGATTAGAGCCAAAAGAGGATTTGCCACTCATCCAAGAAGCATTGCAGAGAGGGAAAGAAGAACAAGAATAAGTGCAAGAATCAAGAAACTACAAGACCTTTTCCCAAAATCAGACAAGCCAACAAGCACTGCAGATATGTTGGATTTGGCGGTTGATTATATCAAAGGCCTCCAGAAACAAGTCAAGATACTCACAGATAAAAGGGCAAAGTGCAGATGTTCAGGTAGTAATCACAAAGAACAATAA 630 0.3698 MQCTLNFSSRLLSSCSNKRHMPKIVESGNEGMESTNCVDSNNNNNNIPRFTTTDFWDVSAFNNSSKISTTNGAEIMFSTSNNAIQAQDVDFGYEKFGLRHHLSLPSSSTKIGGMEKLFQIQGSSAPCKIRAKRGFATHPRSIAERERRTRISARIKKLQDLFPKSDKPTSTADMLDLAVDYIKGLQKQVKILTDKRAKCRCSGSNHKEQ 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212519g00004 209 Gene3D - 136 207 IPR036638 GO:0046983
Stsc212519g00004 209 Pfam Helix-loop-helix DNA-binding domain 140 186 IPR011598 GO:0046983
Stsc212519g00004 209 SMART finulus 141 191 IPR011598 GO:0046983
Stsc212519g00004 209 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 46 203 - -
Stsc212519g00004 209 FunFam Transcription factor bHLH130 family 136 205 - -
Stsc212519g00004 209 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 135 185 IPR011598 GO:0046983
Stsc212519g00004 209 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 138 200 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212519g00004 Stsc-Chr212519 19293 20769 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212519g00004 1 201 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G43140 42.308 3.74e-40 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc212519g00004 HLH 5.7e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212519g00004 - - gmx:100795896 244.973