Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212514g00002 ATGGTGGATGGATCTGGTATAAAACAATTTGTGACTGCTTTAACCGATATGGCTCAAGGTGCTCATCAACCCTCCATTCTACCTATATGGCAACGAGAGCTCCTATTTGCAAGAAACCCACCACAAATCTCATGCAACCATCACGAATACGATCAACTGCCAATAAATACCCAAGACAAGACCATCATTTCTTCGTATGAGAACCATATGACTCAACGCTCCTTCTTCTTTGGACCAACCCAAATAGCTTCCCTTCGTCGTCTGGTTCCACCTCACCATGGCCACTGCACTCGATTTGAGCTTATAACTGCATGCATATGGTGTTGCCGTACAAAAGCATTGCAACTTGCTCCAGAAAATGAAGTTCGCATGATGTGCATCGTGAATGCACGTGATAGGTTTAACCCTAAGATTCCAATTGGTTACTACGGAAACGTTTTTGCTTATCCAGCAGCAGTTACAACTGTGAAGAAGCTCCGTGAAAATCCGTTTGGTTATGCAGTTGAGTTGATAAAGAAAGTAAAAGCTGAGGTGACTGAAGAGTACGTGCGTTCTGTTGCAGATCTAATGGTCACGAAAGGACGACCGTTATTTACAACCGTTGGATCTGTCATTGTGTCAAACTTGACACGTTTTGGGTTTAGAGAAGTGGATTTCGGATGGGGTAATGCACTGTATGCTGGAGTGGCTAAAGGTGGAGTTGGGTCGGGCTTTCATGGAGTAACATTTTTAATGGATCATCAGAATGAGAATGGAGAAGAAGGTGTATTGTTTCCAATTTACTTGCCTTCCAACGCTATGCAGAGATTTGAGAAAGACTTGGGTGATATGCTTGGTGGGGACCTTAACAATAAGGTGGAGATGATGATTTCATATGAAGTCGCATCGGCAGTTACAACGTTAAAGAAGCTTTGTGAAAATCCGTTTGGTTATTCTGTTGAGTTGATAAAGAAAGCAAAAGCTGAGGTGACTGAAGAGTACGTTCGTTCTGTTGCAGATCTAATGGTCACGAAAGGACGACCGTTATTTACAACCGTTGGATCTTGCATCCTGTCAAACTTGACACGTGCTGGGTTAAGAGAGGTGGATTATGGATGGGGTAATGCATTTTACGGAGGAGTATCTGAAGGTGGGGCTGGGGATTTTTTTGGAGTAACATTTATCATGGATTGTGAGAATGCTGAAGGAAAAGAAGGTGTAATGTTTCCAATTTTCTTGCCGGATAAAGCTATGGAGAGGTTTGAGAAGGAGTTGGGTGATATGCTTTGCAAGAGTGATGATGCTTATCTCACGTCTATAACATTATTTGCGAATAATAATGATCACCATCCTGAATTGAGCCACGAGGACGCTGCTCGACTATGCTTGCGCAGGTTGGCCGACCTACGCCGTCCCTATGTGGAGGATTTCAACATGGAATCGCTCCTCTTATGGAAGGATAAGTTTCTCGAGTTAGCGCACGACTATGCCACATTGGAGAACAGGGTTAAGGCCCTCAAGGCAGCCGATGATGAGTTGAAGGAGGAAGTGCTGGAACTCGAGAAGCGCCACCACAGCCGAGCTGATACTGGCAGCTCAAGCATGGTTTAG 1590 0.4428 MVDGSGIKQFVTALTDMAQGAHQPSILPIWQRELLFARNPPQISCNHHEYDQLPINTQDKTIISSYENHMTQRSFFFGPTQIASLRRLVPPHHGHCTRFELITACIWCCRTKALQLAPENEVRMMCIVNARDRFNPKIPIGYYGNVFAYPAAVTTVKKLRENPFGYAVELIKKVKAEVTEEYVRSVADLMVTKGRPLFTTVGSVIVSNLTRFGFREVDFGWGNALYAGVAKGGVGSGFHGVTFLMDHQNENGEEGVLFPIYLPSNAMQRFEKDLGDMLGGDLNNKVEMMISYEVASAVTTLKKLCENPFGYSVELIKKAKAEVTEEYVRSVADLMVTKGRPLFTTVGSCILSNLTRAGLREVDYGWGNAFYGGVSEGGAGDFFGVTFIMDCENAEGKEGVMFPIFLPDKAMERFEKELGDMLCKSDDAYLTSITLFANNNDHHPELSHEDAARLCLRRLADLRRPYVEDFNMESLLLWKDKFLELAHDYATLENRVKALKAADDELKEEVLELEKRHHSRADTGSSSMV 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212514g00002 529 Pfam Transferase family 1 274 - -
Stsc212514g00002 529 Pfam Transferase family 296 418 - -
Stsc212514g00002 529 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 295 416 - -
Stsc212514g00002 529 Gene3D - 56 274 IPR023213 -
Stsc212514g00002 529 Gene3D - 1 52 IPR023213 -
Stsc212514g00002 529 Gene3D - 289 418 IPR023213 -
Stsc212514g00002 529 Coils Coil 489 516 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212514g00002 Stsc-Chr212514 7993 10268 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212514g00002 3 274 Monolignol Biosynthesis Gene Families AT5G48930 25.795 7.86e-20 90.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212514g00002 K19861 - gmx:100787907 360.533