Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212486g00003 ATGACGGCAATATCACTCTCGCTTCACTCCTTTCTCCCTCAGAACCAAAAACCCTGGCAAAACCCTAATTTCACCCTAAAAATCCAAAATCCCCCTTTCAAATTCAGACCCCAATTTTCTCGTGAAACAATCACCCCTCCTTCCTCCACTGACCGCGGCCTCATTTTCCAGGAAAAAGTTCAGTACCTCAAGAATCTCAACGTAAACCCACAGAAAGCCTTCCAAGTAAACCCTAACCTCCGATCCACACCACTCTCCACCCTCAAATCCGTCGAGCAATGCCTCTCTTCCATGGGAATCCACCGCTCCGCCATGGGAAGAATCCTTGACATGCTCCCGGAGCTTCTCAACCGCGACCCCGACATGGACCTCTACCCAATCCTCGATTTCCTCCTCAACGACGTCGGAATCCCTTACCCCGACGTTCGCAAATCCATCTTGCGGTGCCCTAGGCTTTTGATCTCAAGCGTGGAGGAGCAATTGAAGCCGACGCTGAAATTCCTGATGAAATTAGGGTTCACCGGTTCGAATTCTATCACGTGTCAAAACACGGTGCTACTCGTTTCGAGTGTGGAGGGAACGCTCGCCCCGAAGATCGAGTTCTTGAAAAGCCTAGGGCTTTCGGAATTGGAGGTTAATTACATGATTGTGAGGTCGCCTGCTTTGTTAACATATAGTGTAGAGAAGAATTTGAAGCCCAAAGTTGAGTACTTCTTGAAGGAGATGAATGGGAACATTTCAGAGTTGAAGCGGTTTCCGCAGTATTTTTCATTTAGCTTGGAAGGGAGGATTAAGCCAAGGCATAAGCATGAAGTTAAGAGGGCTGCGTGTTATTTGATCAGAACTGTTGAATCTTGGGGAGCTATGACTCAGATGGTAGAAGAGAGTGAGTGGGGGAGAGTGGAAAGAACCTCAGAAAACAGAGAGAAATGA 933 0.478 MTAISLSLHSFLPQNQKPWQNPNFTLKIQNPPFKFRPQFSRETITPPSSTDRGLIFQEKVQYLKNLNVNPQKAFQVNPNLRSTPLSTLKSVEQCLSSMGIHRSAMGRILDMLPELLNRDPDMDLYPILDFLLNDVGIPYPDVRKSILRCPRLLISSVEEQLKPTLKFLMKLGFTGSNSITCQNTVLLVSSVEGTLAPKIEFLKSLGLSELEVNYMIVRSPALLTYSVEKNLKPKVEYFLKEMNGNISELKRFPQYFSFSLEGRIKPRHKHEVKRAACYLIRTVESWGAMTQMVEESEWGRVERTSENREK 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212486g00003 310 Pfam mTERF 132 274 IPR003690 GO:0003690|GO:0006355
Stsc212486g00003 310 Pfam mTERF 56 170 IPR003690 GO:0003690|GO:0006355
Stsc212486g00003 310 SMART mt_12 177 208 IPR003690 GO:0003690|GO:0006355
Stsc212486g00003 310 SMART mt_12 71 101 IPR003690 GO:0003690|GO:0006355
Stsc212486g00003 310 SMART mt_12 246 277 IPR003690 GO:0003690|GO:0006355
Stsc212486g00003 310 SMART mt_12 106 138 IPR003690 GO:0003690|GO:0006355
Stsc212486g00003 310 SMART mt_12 143 174 IPR003690 GO:0003690|GO:0006355
Stsc212486g00003 310 SMART mt_12 213 245 IPR003690 GO:0003690|GO:0006355
Stsc212486g00003 310 PANTHER CGI-12 PROTEIN-RELATED 58 209 IPR003690 GO:0003690|GO:0006355
Stsc212486g00003 310 Gene3D Transcription termination factor 3, mitochondrial 54 278 IPR038538 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212486g00003 Stsc-Chr212486 12826 13994 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Stsc212486g00003 mTERF 8.6e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212486g00003 K15031 - gmx:100785219 323.168