Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212481g00001 ATGAAACAACATAAGATAATTATTACGTTAATAGCCACAATTGCAGCACTTTTGCTATCATGCACTACTGCCACGCGCCGGTGTGGCAATTGTGGCCCGCACCCGGTTCCGTATCCGTTAAGCACTGGACCGGACTGCGGTGACCCAAGTTATAAAATCCGGTGCATCGGAGGAGAATTGTGGTTTGATGCACTTGCCGGATCATCATATACAATCAAGTCCATTGACCCGGGAACCCAACGGATCATAATCCGACCCGCAACACTGGACAAAGGCGCGTGTGTATCAACGGACTTCCATAGCGAAGGCATTAGCCTCAATGAGACCCTTCCCTTTTTCATTGCCACCGGCAACACCGTCTTTTTGTTGAATTGTACCATGAGTGCGCCTCACGCGCCCCCAATAGACTGCTCCGCGAGTAGCCCATGCCATAGTTATATTAAGGACCATGCAGATGCCTACGCGTGCGGGCGCGTAGGCACTTGCTGTTCCTACAAAACTGGTGGATCCCACAAGGAGTATGAGGTTCGAGTTCGCGGTAGTGGTGGTTGTGCGGCGTATCTGAGTTTTGTGGACTTTAACGGTGTGGTGGGCCCGCCAGGGAAGGGGTGGCCGGAGCCAGGGGTTGCAATAGAGTGGGTGGCACCACAGGAACCGGTTTGTAAGGGGCCAACGGATTGCAATGCATTGTTGAATTCCAAGTGTGGAGTGGGTGCTACAAGTGGTGGTTTGCAAAGGTGCTTCTGCAATGCTGGCTTCAAGTGGGATTCTACTAATGGATTATGTCAAGGTCAAACTCAGATCCAGAGTCAAATTTCAAATAAAAAGTGCAAAGGACATGAAAAGGGCGGCCGGTGCAAAGCTAGCAAGAAAAAGAAAATGGCCATGGCTGGTGTCGCTGCTACTTTAGGTGTAATATTCATCATTGCAATAGTAATTGGAGCCCTTTTATACAAGAAGCAAATTCAAAACAAGAGAAAAGCAAAGGAAAAGGAAACCAAGAACAAAAAGAAGAAAGAAATAATCACAAGCACCAAAGCAACTCCATTGTCATCAAGGATCTTCACGGGCAGAGAGATTACGAAAGCAACCAACAACTTCGCCGAAGAAAACCTCATCGGCTCCGGTGGCTTCGGCGAAGTGTTCAAAGGCACTTTTGAAGACGGTTCCATAATTGCCATCAAGCGTGCCAAGCTTGGAAACACAAAAGGCATTGACCAAATCCAAAATGAAGTTAGGGTGCTCTGCCAAGTTAACCATAGAAGCCTAGTGAGGCTACTTGGTTGTTGCTTGGAGCTAGAACACCCTTTACTAATTTATGAGTATGTTTCTAATGGAACACTCTTTGATTATCTCCATCGCCAACCTTTCGCCAGCGATGGCGAAAGGAAAGGCAAAAGGGAGCCACTTAAATGGCTCATTAGGCTAAAAATCGCACACCAAACAGCTGAAGGGCTTTCGTATCTCCACTCTGCAGCCGTGCCCCCTATCTACCACCGGGACGTGAAATCTAGCAATATTCTTCTTGATGACAAGTTTGATGCCAAGGTTTCGGATTTCGGCTTGTCTAGGCTTGTTGAATTAGCTGAAGAAAACAAGAGTCATATCTTTACAAGTGCACAGGGGACACTAGGATACCTTGATCCGGAATACTACCGGAACTTTCAGCTGACTGATAAGAGTGATGTTTATAGCTTTGGAGTTGTGCTAATGGAGCTGCTCACTGCTCAGAGGGCTATTGATTTTAGCAGAGAGGAAGAGAATGTGAACTTGGCAGTGTATGCTAAGAAGAAAATAGTTGAGGACAGGCTTATGGAGGTTCTTGATCCGTTGCTTAAAGATGGAGCTAGCAATGTGGAATTGGAAACTATGAAATCTTTGGGCTATCTTGCAGCTTCATGCTTGGATGATCAGAGGCAAAAAAGGCCTTCTATGAAAGAAGTTTCGGATGAGATTGAATACCTTATTAATGTTGTTAAGGGTCACGGTTCCAAATCCAAACCATAG 2007 0.4634 MKQHKIIITLIATIAALLLSCTTATRRCGNCGPHPVPYPLSTGPDCGDPSYKIRCIGGELWFDALAGSSYTIKSIDPGTQRIIIRPATLDKGACVSTDFHSEGISLNETLPFFIATGNTVFLLNCTMSAPHAPPIDCSASSPCHSYIKDHADAYACGRVGTCCSYKTGGSHKEYEVRVRGSGGCAAYLSFVDFNGVVGPPGKGWPEPGVAIEWVAPQEPVCKGPTDCNALLNSKCGVGATSGGLQRCFCNAGFKWDSTNGLCQGQTQIQSQISNKKCKGHEKGGRCKASKKKKMAMAGVAATLGVIFIIAIVIGALLYKKQIQNKRKAKEKETKNKKKKEIITSTKATPLSSRIFTGREITKATNNFAEENLIGSGGFGEVFKGTFEDGSIIAIKRAKLGNTKGIDQIQNEVRVLCQVNHRSLVRLLGCCLELEHPLLIYEYVSNGTLFDYLHRQPFASDGERKGKREPLKWLIRLKIAHQTAEGLSYLHSAAVPPIYHRDVKSSNILLDDKFDAKVSDFGLSRLVELAEENKSHIFTSAQGTLGYLDPEYYRNFQLTDKSDVYSFGVVLMELLTAQRAIDFSREEENVNLAVYAKKKIVEDRLMEVLDPLLKDGASNVELETMKSLGYLAASCLDDQRQKRPSMKEVSDEIEYLINVVKGHGSKSKP 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212481g00001 668 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 21 - -
Stsc212481g00001 668 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 339 442 - -
Stsc212481g00001 668 Pfam Protein kinase domain 368 649 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc212481g00001 668 ProSitePatterns Protein kinases ATP-binding region signature. 373 395 IPR017441 GO:0005524
Stsc212481g00001 668 SUPERFAMILY Protein kinase-like (PK-like) 348 650 IPR011009 -
Stsc212481g00001 668 Gene3D Phosphorylase Kinase; domain 1 323 442 - -
Stsc212481g00001 668 Gene3D Transferase(Phosphotransferase) domain 1 443 664 - -
Stsc212481g00001 668 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 25 655 IPR045274 GO:0007166
Stsc212481g00001 668 ProSitePatterns Serine/Threonine protein kinases active-site signature. 497 509 IPR008271 GO:0004672|GO:0006468
Stsc212481g00001 668 SMART serkin_6 367 655 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc212481g00001 668 Coils Coil 319 339 - -
Stsc212481g00001 668 FunFam Wall-associated receptor kinase-like 20 443 665 - -
Stsc212481g00001 668 ProSiteProfiles Protein kinase domain profile. 367 655 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc212481g00001 668 CDD STKc_IRAK 373 653 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212481g00001 Stsc-Chr212481 4307 8476 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212481g00001 27 659 Receptor kinase-like Gene Family AT5G02070 56.250 0.0 697
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Stsc212481g00001 Pkinase 2.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212481g00001 - - ahf:112794981 1087.02