Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212478g00001 ATGAACGGTGGTGCAAGTTTTGAGGCTGAGGCAGAGGCAGAGTGCTCTGAATTTGTGGAAGTTGATCCTAGTGGAAGATATGGAAGGTATAATGAAATTCTTGGCAAAGGTGCTTCCAAGACAGTTTATAGAGCATTTGATGAATATGAAGGGATAGAAGTTGCATGGAACCAAGTGAAGCTTTACGACTTTCTGCAGAATCCAGAAGACCTTGAGAGATTATACTGTGAAATTCATCTTCTTAAGACATTGAAACACAAGAACATCATGAAGTTCTACACTTCCTGGGTTGATACTAGAAACAGACATATTAATTTCGTCACTGAGATGTTCACTTCTGGGACTCTAAGACAGTACAGGCTTAAACACAGAAGGGTTAACATCAGAGCTGTTAAGCATTGGTGCAGGCAGGTTTTGGAAGGGCTGCTTTATCTACACACCCATGACCCTCCTGTGATACATAGAGATCTCAAGTGTGATAACATTTTCATCAATGGCAACCAAGGGGAAGTTAAAATTGGGGATCTTGGCCTTGCTGCAATTCTTCGCAAATCTAATGCCGCTCACTGTGTTGGCACACCTGAGTTTATGGCTCCTGAAGTATATGAAGAGGATTACAATGAATTGGTTGACATATACTCATTTGGAATGTGCCTCTTGGAGATGGTCACCTTTGAATATCCTTATAGTGAATGCAACCATCCTGCTCAAATTTACAAGAAAGTTTCCTCTGGGAAGATGCCAGAGTCTCTTTACAAAGTGAATGATCCCGAGGTACGACAATTCGTAGAGAAATGCTTAGCAACTGTGTCCCTCAGACTTTCAGCAAAGGAACTATTGGAGGACCCTTTTCTCCAACTTGATGATTATGGATATGACTTGAAATCATTGCAATATCAAAGAGACTGCTATGAAGTAGCCCCAATGATCAGACAGTCTCTTAATGGAATTCATAGCAGCAACACCACCTTAATGAGTGGCTCCACTGATAATCTTGGTGGTTATGGACCTGTATCAGAATTGGATTTTCATCAAGATGATTTTGAAACAAGTGAAATTGATCTCTTTGATTGCGAAGAGGACGATAAATTAGCTGAATTTGACGCCTCGATTAAAGGTCGAGTTCGAAACATCTATTTCCCGTTTGACACCGAGACTGATACTGCATTGAGCGTTGCTACTGAAATGATAGCTGAACTTGACATCACTGATCAAGATGTAACAAAATTAGCAGATATGATAGATAATGAAATTGCAAACTTGGTCCCTGAGTGGAGAAGGGGACCCAGAATAGAGGAAAGTTCACAATGTGAAAGTGAACATTTCTGCCACAGTTGTGCTAGAAATGGTTCTCTATTTGATTATGCATCATCAGATAATCCATGTGCCAAGAATCTGCAATTTTTCCATTGTTCTAAGAACGGATGTGCAGCAGTTCACGGAAGATTTGAGGAGATTACTTATCAAGTTGAAGGGTCTGAAAACAGTGCTACAGAAGGTGTACAAGATCCATCATGCCAACCCAGTAGCATTCGTTATACCGATATCTGGGCACAGCGCGATGAACCAGACTTGTTTTCTGAAGAGTTAAAAGACATACACTGTGAGGACAAGTCCAATGAGGCATCAAATCAATCAACCATCAAGGATGATGGAAGAACTATTAATGTGGATGATCAAAGTCATCTCAATGCTAGAAAGCCAACTTCTTTTCCTTCGCCAGATTGTGTTCTTATGGACTATGAGAATGAAATTAGACAAGAACTGAGATGGCTAAAAGCAAAATACCAGATGCAGCTAAGAGAGCTTAGAGACCAGCAACTAGGGAGTAAACCAAAGTTAGCTAGCACATCCCCTGAAACTGAAAAATTGGAGCTATCAGCTACATCCCACTTAAAGTTACAGGACAAGAAACCATTGCTGAGGTCTTTAGTGTGTGGTAACAATTTTCTTGTTGATGCTGAGAAGTGCACAAGTTTGGCTGATCAAATGGTTCAAAATGGTGATGAGACAAGTGAGTCTAACAGTCCTGAACAAATAGTCACTGCCAAGGATTTCTTTGCAGGAGCTTTGCTTCCACAGTCCCTTTACAGGGCCACTTCTCTTCCTGTTGATGCAGTAGATGTCTAG 2130 0.4085 MNGGASFEAEAEAECSEFVEVDPSGRYGRYNEILGKGASKTVYRAFDEYEGIEVAWNQVKLYDFLQNPEDLERLYCEIHLLKTLKHKNIMKFYTSWVDTRNRHINFVTEMFTSGTLRQYRLKHRRVNIRAVKHWCRQVLEGLLYLHTHDPPVIHRDLKCDNIFINGNQGEVKIGDLGLAAILRKSNAAHCVGTPEFMAPEVYEEDYNELVDIYSFGMCLLEMVTFEYPYSECNHPAQIYKKVSSGKMPESLYKVNDPEVRQFVEKCLATVSLRLSAKELLEDPFLQLDDYGYDLKSLQYQRDCYEVAPMIRQSLNGIHSSNTTLMSGSTDNLGGYGPVSELDFHQDDFETSEIDLFDCEEDDKLAEFDASIKGRVRNIYFPFDTETDTALSVATEMIAELDITDQDVTKLADMIDNEIANLVPEWRRGPRIEESSQCESEHFCHSCARNGSLFDYASSDNPCAKNLQFFHCSKNGCAAVHGRFEEITYQVEGSENSATEGVQDPSCQPSSIRYTDIWAQRDEPDLFSEELKDIHCEDKSNEASNQSTIKDDGRTINVDDQSHLNARKPTSFPSPDCVLMDYENEIRQELRWLKAKYQMQLRELRDQQLGSKPKLASTSPETEKLELSATSHLKLQDKKPLLRSLVCGNNFLVDAEKCTSLADQMVQNGDETSESNSPEQIVTAKDFFAGALLPQSLYRATSLPVDAVDV 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212478g00001 709 FunFam probable serine/threonine-protein kinase WNK9 111 290 - -
Stsc212478g00001 709 Gene3D Phosphorylase Kinase; domain 1 11 109 - -
Stsc212478g00001 709 SMART serkin_6 28 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc212478g00001 709 Gene3D Transferase(Phosphotransferase) domain 1 111 290 - -
Stsc212478g00001 709 CDD STKc_WNK 26 285 - -
Stsc212478g00001 709 Coils Coil 709 709 - -
Stsc212478g00001 709 ProSiteProfiles Protein kinase domain profile. 28 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc212478g00001 709 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 10 626 - -
Stsc212478g00001 709 SUPERFAMILY Protein kinase-like (PK-like) 31 286 IPR011009 -
Stsc212478g00001 709 Pfam Protein kinase domain 31 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc212478g00001 709 ProSitePatterns Serine/Threonine protein kinases active-site signature. 152 164 IPR008271 GO:0004672|GO:0006468
Stsc212478g00001 709 Coils Coil 586 606 - -
Stsc212478g00001 709 FunFam Probable serine/threonine-protein kinase WNK1 13 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212478g00001 Stsc-Chr212478 5361 8657 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212478g00001 1 497 MAP Kinase Kinase Kinase AT3G22420 54.690 0.0 575
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Stsc212478g00001 Pkinase 1.4e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212478g00001 K08867 - gmx:100804179 1160.21