Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212461g00006 ATGACTGGTTCAGGTTCACCCTGTGGAGCCTGCAAATTCTTGAGGAGAAAATGTCTGAGAGGTTGTGTTTTCGCACCTTACTTTTGCCATGAAGAAGGTGCTACCCATTTTGCAGCCATTCATAAGGTCTTTGGTGCAAGCAATGTCTCAAAGCTCCTTGCTCATCTTCCTGTTGCCCATCGCTGCGAAGCCGCAGTCACCATCTCATACGAAGCTCAGGCAAGGCTTCAAGATCCAATCTATGGCTGTGTCTCACATATTTTTGCCCTACAACAACAGGTTGTGAATTTACAAGCACAGTTGGCTTATTTACGGGAACAAGCAACACAGAGATGTAATCTAAATGCCTCTCTCATTGAAAACCCTAATAATAATGAGGATTACTTTGGAAAACCTACTACTACTTCCCTTCATCATCAGGATCTTAAAAATTATTGGTTCCAGAGGGAAAATTCTACCATGGCTCCACAGTTTCTTTCTAATTCATCTAATTATCACTCATCAGCAACACAACAATACCATGTGAATACTCCTCCTCCTCCAACTTCCAATAGCAGTCTCATGCTGATGGACACAAACCCTATTGGGAACTATGAAAATTCAAGCAACGTCTCCTTTAATTCTTGCAGCAGCTTATTTGATGAGAGTTGTGACTCAGTGTTCTTTGACATGAAAAGACTGTGGGCCTTGCATGAAGTGGAAGAACTTCAATAA 714 0.4188 MTGSGSPCGACKFLRRKCLRGCVFAPYFCHEEGATHFAAIHKVFGASNVSKLLAHLPVAHRCEAAVTISYEAQARLQDPIYGCVSHIFALQQQVVNLQAQLAYLREQATQRCNLNASLIENPNNNEDYFGKPTTTSLHHQDLKNYWFQRENSTMAPQFLSNSSNYHSSATQQYHVNTPPPPTSNSSLMLMDTNPIGNYENSSNVSFNSCSSLFDESCDSVFFDMKRLWALHEVEELQ 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212461g00006 237 Coils Coil 87 107 - -
Stsc212461g00006 237 ProSiteProfiles LOB domain profile. 6 108 IPR004883 -
Stsc212461g00006 237 Pfam Lateral organ boundaries (LOB) domain 7 104 IPR004883 -
Stsc212461g00006 237 PANTHER LOB DOMAIN CONTAINING PROTEIN 1 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212461g00006 Stsc-Chr212461 19112 20412 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212461g00006 7 177 AS2 family AT3G58190 61.850 3.18e-70 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Stsc212461g00006 LOB 3.4e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212461g00006 K13945 K13944 gmx:100816960 278.1