Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212461g00003 ATGATTTCTTGCTTTTTCTTTCAGCATGATGTGTCTTCAGATATTATGCCTGCTTGCTTCCATGGTACAGAGAAAATCCTGACAAGTGAATCATTGGATGTTTTATTGCCCATTAAACGTTCTGGGAACAATTATTCACTTCATTCTGCTAAAGAGAAAATGGATAATAATTTGACCAAGCATGGGGGGTCTGAATTTTACAGTGGTGAGAGATCTGTTTTGCTTCAATCAATATCCAATATGATGAATATGGAGCATCAAGAATGTGGAGAGATGAGATCAATGAGGGGGAGGAAGTATGAAGGGGGTAGTAGTGGCTGCAAAGACATGAAGTTGGAATTAGATAAGAACACAACACCCATTTTACACAATACTGTTTTGAAAAATGATAGATTCAATGATTCAATAGCTGCATCGGAGAAAGTCACAATTGATTCTGCGTCCTTCCCTTCTTGTGAAACCAATAAGTTGCATTATATGGATATTAACCAAAAAGAAATGCAGATTTTAACCAGACCTTCAGATGCAAACTTCCAAAAAGTTGCTGAAAAGTCAAAGTCTCGGACTTACCCTTGCTATAAGATCAACTCATACTTTGAGAGTGAGACGGATATCTTGAACACGTTGAAGTTCCCAGCCGGTTGTGAGTTACATGAAGCTCTTGGACCGGCTTTCCTGAAAGGGAGTAAATATTTCAATGGGGAAGAACAGGTAAATCAAGATTCAAAACCTATGGATATACCAGATGATATTAACTCTAGCCAATTGACATATGAGTGTCTTCCAGAGCATCTTTTGGAAGCAATGGTGGCTAACTTTTTCCATAGCAATAATGATGTTAACAGCGGCGAATCATTTTGCACATCAATGAATCAGGATGCTTCTATTCACCAAGTGCGTGCTAATAATGCAAATGGCTGTTCAATAAGCGAGTCTTGTCTTATCAGAGAAGACAAAAATAATTGTTTGAGTTCATCATCTGTTGAACCGTTTGAAAGATCTGCAGAACCAGCTAAGAACAGTAAGAGGAGAGGTAGGGTAGGAGAGAGGTGTAGGCCTAGGCCAAGGGACAGGCAGCTTATCCAAGACCGTATTAAGGAGTTACGGGAGCTGGTGCCAAGTGGATCAAAGTGCAGCATTGATTCACTACTGGAGCGCGCTATAAAGCACATGCTCTTTCTCCAGAGCATAACTAAGCATGCTGACACAAAGACTATGTTGCAACACATGAAAATAGATGCACTCGGATCCTCTAGTTATGAGCAGGGTTCAAGTTGGATATTGGAGGTGGGGGGCCATCTGAAAGTTCATTCCATATTGGTGGAGAATCTTAGCAAGAAGGGACAGATGTTTGTTGAGATGCTGTGTGAAGAGAGCAGCCATTTTCTTGAAATAGCAGAGGCCATTAGAAGCTTGGACCTAACAATTTTAAAGGGCTCAACAAGAAGTCATGGTGAGAAGATTTGGATAAGCTTTGTTGTTGAGGTAGGCTCCAAACTCAGAAGCAATTGTGTTTTCTTGAATCCCTGTCCAAATCCTGTTAAGGTCAACCAGTTAAGCATGTGA 1566 0.4042 MISCFFFQHDVSSDIMPACFHGTEKILTSESLDVLLPIKRSGNNYSLHSAKEKMDNNLTKHGGSEFYSGERSVLLQSISNMMNMEHQECGEMRSMRGRKYEGGSSGCKDMKLELDKNTTPILHNTVLKNDRFNDSIAASEKVTIDSASFPSCETNKLHYMDINQKEMQILTRPSDANFQKVAEKSKSRTYPCYKINSYFESETDILNTLKFPAGCELHEALGPAFLKGSKYFNGEEQVNQDSKPMDIPDDINSSQLTYECLPEHLLEAMVANFFHSNNDVNSGESFCTSMNQDASIHQVRANNANGCSISESCLIREDKNNCLSSSSVEPFERSAEPAKNSKRRGRVGERCRPRPRDRQLIQDRIKELRELVPSGSKCSIDSLLERAIKHMLFLQSITKHADTKTMLQHMKIDALGSSSYEQGSSWILEVGGHLKVHSILVENLSKKGQMFVEMLCEESSHFLEIAEAIRSLDLTILKGSTRSHGEKIWISFVVEVGSKLRSNCVFLNPCPNPVKVNQLSM 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212461g00003 521 PANTHER TRANSCRIPTION FACTOR BHLH155-LIKE ISOFORM X1-RELATED 50 497 IPR043561 GO:0003700|GO:0006355
Stsc212461g00003 521 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 358 413 IPR036638 GO:0046983
Stsc212461g00003 521 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 345 394 IPR011598 GO:0046983
Stsc212461g00003 521 MobiDBLite consensus disorder prediction 324 356 - -
Stsc212461g00003 521 MobiDBLite consensus disorder prediction 335 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212461g00003 Stsc-Chr212461 9902 12686 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212461g00003 13 515 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G31280 34.862 2.36e-76 253
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212461g00003 - - ccaj:109796613 590.882