Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212456g00002 ATGGCCATGTTCCCAGTTGACACACTCAAAACCCGCATGCAAGCTCTTGCCACCACCACCACTTCATCCCTCCTCCCCCCCTTCGGCCTCCGCCAATCCCTCGCTTCCATCCTCAAGCTCGAAGGTCCTTCCTCCCTCTACCGCGGCATCTCCGCCATGGCCCTCGGTGCTGGCCCCGCCCACGCCGTTTACTTCTCCGTCTATGAGTTCTGCAAACAAGCCTTCTCCTCCTCTTCCATCACCACCAACAAATATTCGTCTCTGGTGCATGCCGCTTCTGGTGTCTGCGCTACAGTCACCAGCGACGCCGTTTTCACTCCCATGGACGTGGTGAAGCAGAGGCTGCAGCTCAAGAGCAGTCCGTACAAGGGCGTGGTGGATTGCGTGAGCAGAGTGGCGCGAGAAGAAGGCGTTGCCGCGTTTTTTAAGTCGTATCGGACTACGGTTGTCATGAACGCGCCGTTTACAGCTGTGCATTTCGCGGCCTATGAGGCCGCAAAGAAGGGGCTGGTGGAGGTGTCGCCGGAGAGCGTGGATGATGGGAGATGGGTGATTCATGCTACCGCTGGTGGTGCTGCCGGAGCCTTGGCTGCTGTCGTCACAACGCCGCTTGATGTTGTCAAAACTCAGCTTCAGTGCCAGGGTGTATGTGGGTGTGACAGATTCTCTAGTAATTCAATTGGGCATGTAACTGAAAGAGTGATAAGAAAAGATGGATACAGAGGTCTTATGAGAGGGTATGTGCCTAGGATGCTGTTTCATGCACCTGCTGCTGCAATTTGTTGGTCCACTTACGAAGCATCCAAATCTTTCTTTCACAAACTTAATTAA 831 0.5427 MAMFPVDTLKTRMQALATTTTSSLLPPFGLRQSLASILKLEGPSSLYRGISAMALGAGPAHAVYFSVYEFCKQAFSSSSITTNKYSSLVHAASGVCATVTSDAVFTPMDVVKQRLQLKSSPYKGVVDCVSRVAREEGVAAFFKSYRTTVVMNAPFTAVHFAAYEAAKKGLVEVSPESVDDGRWVIHATAGGAAGALAAVVTTPLDVVKTQLQCQGVCGCDRFSSNSIGHVTERVIRKDGYRGLMRGYVPRMLFHAPAAAICWSTYEASKSFFHKLN 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212456g00002 276 Gene3D Mitochondrial carrier domain 82 276 IPR023395 -
Stsc212456g00002 276 PANTHER MITOFERRIN-1-RELATED 1 273 - -
Stsc212456g00002 276 FunFam Mitochondrial RNA-splicing protein MRS3 120 276 - -
Stsc212456g00002 276 SUPERFAMILY Mitochondrial carrier 2 266 IPR023395 -
Stsc212456g00002 276 ProSiteProfiles Solute carrier (Solcar) repeat profile. 1 74 IPR018108 -
Stsc212456g00002 276 PRINTS Mitochondrial carrier protein signature 49 69 IPR002067 GO:0055085
Stsc212456g00002 276 PRINTS Mitochondrial carrier protein signature 1 14 IPR002067 GO:0055085
Stsc212456g00002 276 PRINTS Mitochondrial carrier protein signature 190 212 IPR002067 GO:0055085
Stsc212456g00002 276 PRINTS Mitochondrial carrier protein signature 100 118 IPR002067 GO:0055085
Stsc212456g00002 276 PRINTS Mitochondrial carrier protein signature 142 160 IPR002067 GO:0055085
Stsc212456g00002 276 ProSiteProfiles Solute carrier (Solcar) repeat profile. 181 271 IPR018108 -
Stsc212456g00002 276 ProSiteProfiles Solute carrier (Solcar) repeat profile. 85 169 IPR018108 -
Stsc212456g00002 276 Pfam Mitochondrial carrier protein 183 274 IPR018108 -
Stsc212456g00002 276 Pfam Mitochondrial carrier protein 2 77 IPR018108 -
Stsc212456g00002 276 Pfam Mitochondrial carrier protein 86 171 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212456g00002 Stsc-Chr212456 3332 6001 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212456g00002 1 276 Chloroplast and Mitochondria Gene Families AT1G07030 67.148 4.47e-129 367
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212456g00002 K15113 - tcc:18597466 405.216