Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212456g00001 ATGGCTACAGACACTTCACAGAACTTTCAGGCCGTCATTCCAGCTGAGTTCCACACTGAACTTTCACTACCAACAGCAGATCACGATGGCTTGCAGTTCTGGCAGTACATGGTTGCAGGTTCAATAGCAGGATCAGTGGAGCACATGGCCATGTTCCCAGTTGACACACTCAAAACCCGCATGCAAGCTCTTGCCACCACCACCACTTCATCCCTCCTCCCCCCCTTCGGCCTCCGCCAATCCCTCGCTTCCATCCTCAAGCTCGAAGGTCCTTCCTCCCTCTACCGCGGCATCTCCGCCATGGCCCTCGGTGCTGGCCCCGCCCACGCCGTTTACTTCTCCGTCTATGAGTTCTGCAAACAAGCCTTCTCCTCCTCTTCCATCACCACCAACAAATATTCGTCTCTGGTGCATGCCGCTTCTGGTGTCTGCGCTACAGTCACCAGCGACGCCGTTTTCACTCCCATGGACGTGGTGAAGCAGAGGCTGCAGCTCAAGAGCAGTCCGTACAAGGGCGTGGTGGATTGCGTGAGCAGAGTGGCGCGAGAAGAAGGCGTTGCCGCGTTTTTTAAGTCGTATCGGACTACGGTTGTCATGAACGCGCCGTTTACAGCTGTGCATTTCGCGGCCTATGAGGCCGCAAAGAAGGGGCTGGTGGAGGTGTCGCCGGAGAGCGTGGATGATGGGAGATGGGTGATTCATGCTACCGCTGGTGGTGCTGCCGGAGCCTTGGCTGCTGTCGTCACAACGCCGCTTGATGTTGTCAAAACTCAGCTTCAGTGCCAGGGTGTATGTGGGTGTGACAGATTCTCTAGTAATTCAATTGGGCATGTAACTGAAAGAGTGATAAGAAAAGATGGATACAGAGGTCTTATGAGAGGGTATGTGCCTAGGATGCTGTTTCATGCACCTGCTGCTGCAATTTGTTGGTCCACTTACGAAGCATCCAAATCTTTCTTTCACAAACTTAATTAA 975 0.5354 MATDTSQNFQAVIPAEFHTELSLPTADHDGLQFWQYMVAGSIAGSVEHMAMFPVDTLKTRMQALATTTTSSLLPPFGLRQSLASILKLEGPSSLYRGISAMALGAGPAHAVYFSVYEFCKQAFSSSSITTNKYSSLVHAASGVCATVTSDAVFTPMDVVKQRLQLKSSPYKGVVDCVSRVAREEGVAAFFKSYRTTVVMNAPFTAVHFAAYEAAKKGLVEVSPESVDDGRWVIHATAGGAAGALAAVVTTPLDVVKTQLQCQGVCGCDRFSSNSIGHVTERVIRKDGYRGLMRGYVPRMLFHAPAAAICWSTYEASKSFFHKLN 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212456g00001 324 SUPERFAMILY Mitochondrial carrier 29 314 IPR023395 -
Stsc212456g00001 324 Gene3D Mitochondrial carrier domain 7 222 IPR023395 -
Stsc212456g00001 324 Gene3D Mitochondrial carrier domain 223 324 IPR023395 -
Stsc212456g00001 324 ProSiteProfiles Solute carrier (Solcar) repeat profile. 133 217 IPR018108 -
Stsc212456g00001 324 ProSiteProfiles Solute carrier (Solcar) repeat profile. 229 319 IPR018108 -
Stsc212456g00001 324 PANTHER MITOFERRIN-1-RELATED 28 321 - -
Stsc212456g00001 324 Pfam Mitochondrial carrier protein 31 125 IPR018108 -
Stsc212456g00001 324 Pfam Mitochondrial carrier protein 231 322 IPR018108 -
Stsc212456g00001 324 Pfam Mitochondrial carrier protein 134 219 IPR018108 -
Stsc212456g00001 324 ProSiteProfiles Solute carrier (Solcar) repeat profile. 31 122 IPR018108 -
Stsc212456g00001 324 PRINTS Mitochondrial carrier protein signature 49 63 IPR002067 GO:0055085
Stsc212456g00001 324 PRINTS Mitochondrial carrier protein signature 97 117 IPR002067 GO:0055085
Stsc212456g00001 324 PRINTS Mitochondrial carrier protein signature 148 166 IPR002067 GO:0055085
Stsc212456g00001 324 PRINTS Mitochondrial carrier protein signature 36 49 IPR002067 GO:0055085
Stsc212456g00001 324 PRINTS Mitochondrial carrier protein signature 190 208 IPR002067 GO:0055085
Stsc212456g00001 324 PRINTS Mitochondrial carrier protein signature 238 260 IPR002067 GO:0055085
Stsc212456g00001 324 FunFam Mitochondrial RNA-splicing protein MRS3 168 324 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212456g00001 Stsc-Chr212456 3332 6001 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212456g00001 24 324 Chloroplast and Mitochondria Gene Families AT1G07030 67.881 2.08e-145 411
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212456g00001 K15113 - qsa:O6P43_026278 466.463