Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212441g00004 ATGGTTGCAAGTTTTTGCTATTCACAAACCTTTCTTCACCATGCATTCTTCTCATCCTTCCTTGTTTCTAATATTCTCTCAGCATATTCAATTGAGTTCCAAATATCTAGGTTTAATCCTGGAGATCCAAACATAATTTACAGAGGTCAAGCAGGTCCTCGAGTTGGAACAATTGAATTGAACAACAATTTTGATTATATATCCCAAGTTGGATCTGCAATTTACTCCAAAGATGTGCTCTTATATGAATCAAGCTCAGGAAAACAAGCTGATTTCACAACACACTTCACCTTTGTCATTGATACTCAAGGAAGATCAAAATATGGTACTGGCCTTGCTTTCTTCCTTGCACCTTCTGGATTCCAAATCCCACTGAACTCGGCCGGCGGCTTCCTCGGCCTATATAACACATCGACCAAAGACTCTTCCCGCAACCAGATTGTTCATGTAGAGTTTGATTCTTTCTCCAATCCAAAATGGGATCCCAAAATGGAGCATGTTGGCATCAACATCAACTCAATTTCTTCTGCAAATTACACTGCTTGGAATGCTAGCAGGCACACTACTGGTGTAAACATGGAGAGACATGTAATTCAGTCATGGGAGTTCAAGTTTAGTTTGGATTTGGAGCCTACTAATGATAATGCAAAGAATCATGAAAGGAAGACATGGAAAGTGGTGGTTGCATCAATTGCAGGAGCTGTTATTGTGGCAATTATTTCATCATATGTAATAATTACAAGGTGGAAGAGAAAGAAAAGGGATGCTATAATAGAGAGGATGAACTCTATTGAAGATCTTGAAAGAGGAGCAGGACCAAGAAGGTTCTCTTATGAAGAGATTGTCTTGGCCACCAATAACTTCTCCCCAAACAGGAAGTTAGGTCAAGGTGGATTTGGCGCAGTGTACAGAGGCTACTTTGCAGATTTGGATTTGGTTGTTGCTGTTAAGAGGATATCAAGCGGATCAAGACAGGGGAAAAGAGAGTATGTAACAGAGGTAAGGGTTATTAGCAGGTTAAGGCATCGAAATCTTGTGCAACTCATAGGTTGGTGCCATGATCAAGGTGAGTTCCTTCTTGTTTATGAGTATATGCCAAATGGTAGCCTTGATTATCATTTGTTAGGGAGTAGAACTCCCTTAACTTGGAACTTGAGGCACAAGATAGTTCTTGGTTTGGCTTGTGCTATTCTCTACCTTCATGAAGAATGGGAACAATGTGTAGTGCATAGAGATATCAAACCAAGTAATGTTATGCTAGATTCTAGTTTCAATGTTAAGCTTGGTGATTTTGGTTTGGCTAAACTCATGGACCATGAGTTGGGTCCCCAAACTTCAGCTTTAGCTGGAACTATTGGTTATATGGCTCCAGAATATATAAGTAGTCGAAGGGCAAGTAAGGAGTCAGATGTGTATAGCTTTGGGTTGGTTGTTTTAGAGATTGTGACTGGAAAGAAGGTGTTTGACGTTATAAGTGATGAAGGTAGTGAAAAGGGTTTAGCTGAGTGGGTGTGGGATCATTATGGAAGAGAAGAGCTTCATATGGTTGTGGATGAGAGATTGCAGAAAGATTTTGATGAGAAAGAAGTGAAGTGTTTGATTATAGGTGGTATGTGGTGTTGTCATCCTGATAAGAGTTTAAGACCATCAATAAGGCAAGCAATTCAGGTGCTGAATTATGAAGCTACGGTTCCGCAACTTCCAAGAAAGATGCCAATTGCCATATATCAGTATCATGTCCCTACACCTTCTGCGAGTTCTGATGGTGCTTCCATTAGCGTTAGCCTAAGATCAGGTCGTTGA 1803 0.4032 MVASFCYSQTFLHHAFFSSFLVSNILSAYSIEFQISRFNPGDPNIIYRGQAGPRVGTIELNNNFDYISQVGSAIYSKDVLLYESSSGKQADFTTHFTFVIDTQGRSKYGTGLAFFLAPSGFQIPLNSAGGFLGLYNTSTKDSSRNQIVHVEFDSFSNPKWDPKMEHVGININSISSANYTAWNASRHTTGVNMERHVIQSWEFKFSLDLEPTNDNAKNHERKTWKVVVASIAGAVIVAIISSYVIITRWKRKKRDAIIERMNSIEDLERGAGPRRFSYEEIVLATNNFSPNRKLGQGGFGAVYRGYFADLDLVVAVKRISSGSRQGKREYVTEVRVISRLRHRNLVQLIGWCHDQGEFLLVYEYMPNGSLDYHLLGSRTPLTWNLRHKIVLGLACAILYLHEEWEQCVVHRDIKPSNVMLDSSFNVKLGDFGLAKLMDHELGPQTSALAGTIGYMAPEYISSRRASKESDVYSFGLVVLEIVTGKKVFDVISDEGSEKGLAEWVWDHYGREELHMVVDERLQKDFDEKEVKCLIIGGMWCCHPDKSLRPSIRQAIQVLNYEATVPQLPRKMPIAIYQYHVPTPSASSDGASISVSLRSGR 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212441g00004 600 ProSitePatterns Serine/Threonine protein kinases active-site signature. 408 420 IPR008271 GO:0004672|GO:0006468
Stsc212441g00004 600 FunFam L-type lectin-domain containing receptor kinase IX.1 273 364 - -
Stsc212441g00004 600 FunFam Lectin-domain containing receptor kinase A4.3 365 578 - -
Stsc212441g00004 600 ProSitePatterns Protein kinases ATP-binding region signature. 294 317 IPR017441 GO:0005524
Stsc212441g00004 600 PANTHER - 60 562 - -
Stsc212441g00004 600 SUPERFAMILY Concanavalin A-like lectins/glucanases 28 209 IPR013320 -
Stsc212441g00004 600 Gene3D Phosphorylase Kinase; domain 1 273 364 - -
Stsc212441g00004 600 CDD STKc_IRAK 294 559 - -
Stsc212441g00004 600 SMART serkin_6 288 563 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc212441g00004 600 CDD lectin_legume_LecRK_Arcelin_ConA 31 188 IPR001220 GO:0030246
Stsc212441g00004 600 Pfam Protein kinase domain 290 556 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc212441g00004 600 Gene3D Transferase(Phosphotransferase) domain 1 365 580 - -
Stsc212441g00004 600 SUPERFAMILY Protein kinase-like (PK-like) 272 580 IPR011009 -
Stsc212441g00004 600 ProSiteProfiles Protein kinase domain profile. 288 545 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc212441g00004 600 Pfam Legume lectin domain 31 182 IPR001220 GO:0030246
Stsc212441g00004 600 Gene3D - 28 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212441g00004 Stsc-Chr212441 10077 12046 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212441g00004 30 577 Receptor kinase-like Gene Family AT5G10530 51.220 0.0 584
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Stsc212441g00004 Pkinase 3.1e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212441g00004 - - adu:107487060 887.871