Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212439g00001 ATGGAGGACAGAAAAGTCAACACAATAGCAATAGTATCAGTGGTGACACTGATCATAGTGATCATCGTTGCTCGCATCACCATGAAGCTCTCAAGAGCCTTCTTCCTCATATGCGGCGCTGACGTGGCAGTTATCTTCACCGTCTTCTCCTTCGTCCTAATAAGAAACCGTTACAACAAACGGAGGAAGCAGTTAGAGTCACGCTTCAAGTCAGAAGGCAGAGAGCTCCGAATAGAGTACAGCTTCTTGCGCAAAGTGGCCGGCGTTCCAACTAAATTCCGTTACAACGAACTCGAACAAGCAACCGACGGTTTCCAAGCTCTTCTTGGAAAAGGCTCCTCCGCAACCGTCTTCAAAGGGATCCTCTCCGACGGAACTTCGGTCGCCGTCAAGAGGATCGACGACGGAGCCGAAAGAGGCGAAAGAGAGTTCAGATCAGAGGTTGCAGCCATTGCTAGCGTTCACCATGTCAACCTCGTGCGTTTATACGGTTACTGCAATGCTGCTTCTTCACCAAGGTACCTTGTTTATGAGTTCATATCAAACGGTTCCTTGGATTCTTGGATTTTTGCCAGAAAGGATAATGATAATAATAGTAGAAGAGTTGGAGGGTGTTTGCCTTGGAGCTTAAGGTACCAGGTCGCAATCGATGTGGCGAAAGGACTTGGTTACCTCCACCATGATTGCAGGGCGAGGATTCTTCATCTTGATGTGAAGCCTGAGAATATACTGTTAGATGAGAATTACAGAGCGGTTGTGGCGGATTTCGGGCTCGCGAAGCTGGTTGGGAAGGATGTTAGCCAAGTTATGACAACTCTGAGAGGAACAAGAGGGTATTTAGCACCTGAGTGGCTCTTGGAAAGAGGTGTTTCGGAGAAGACTGATGTGTATAGCTATGGGATGGTGTTGTTGGAGATGATTGGAGGGAGGAGGAATGTTATGAAGGTGGAAGATCCAAAGGACAAGAGTAAGAAGAAGTTGCAGTTCTTTCCAAAGATTGTGAATGAGAAATTGAGGGAGGGAAAGTTGATGGAGATTGTGGATGAGAGACTGATGGTGGAGGGTGAGGGTGTTGAGGAGAGTGAGGTGGTTAGGTTGGTGAATGTAGCATTGTGGTGCATACAAGAGAGGCCAAGAATGAGGCCAAGCATGGGACAAGTTGCTGATATACTTGAAGGGCGTGTGAGAGTGGAGGAGCCACCAGATAGTAGAATGGTGCTTGTTGATTTGCTATCTGAAGATGAAAACAACCCTGCAATGGTGCTGAATAACACGGCAAGGTTATTGACATCTATGTCTAGCCATGAAGATTTTTCATCAACCTATTCAATGGGAGCTACCACTATTCTATCTGGTAGATAG 1362 0.467 MEDRKVNTIAIVSVVTLIIVIIVARITMKLSRAFFLICGADVAVIFTVFSFVLIRNRYNKRRKQLESRFKSEGRELRIEYSFLRKVAGVPTKFRYNELEQATDGFQALLGKGSSATVFKGILSDGTSVAVKRIDDGAERGEREFRSEVAAIASVHHVNLVRLYGYCNAASSPRYLVYEFISNGSLDSWIFARKDNDNNSRRVGGCLPWSLRYQVAIDVAKGLGYLHHDCRARILHLDVKPENILLDENYRAVVADFGLAKLVGKDVSQVMTTLRGTRGYLAPEWLLERGVSEKTDVYSYGMVLLEMIGGRRNVMKVEDPKDKSKKKLQFFPKIVNEKLREGKLMEIVDERLMVEGEGVEESEVVRLVNVALWCIQERPRMRPSMGQVADILEGRVRVEEPPDSRMVLVDLLSEDENNPAMVLNNTARLLTSMSSHEDFSSTYSMGATTILSGR 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212439g00001 453 Gene3D Transferase(Phosphotransferase) domain 1 180 405 - -
Stsc212439g00001 453 PANTHER OS07G0415500 PROTEIN 30 403 - -
Stsc212439g00001 453 Coils Coil 55 75 - -
Stsc212439g00001 453 Pfam Protein kinase domain 108 387 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc212439g00001 453 FunFam Putative receptor-like protein kinase 180 399 - -
Stsc212439g00001 453 ProSiteProfiles Protein kinase domain profile. 103 395 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc212439g00001 453 SMART serkin_6 103 390 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc212439g00001 453 SUPERFAMILY Protein kinase-like (PK-like) 85 391 IPR011009 -
Stsc212439g00001 453 Gene3D Phosphorylase Kinase; domain 1 64 179 - -
Stsc212439g00001 453 ProSitePatterns Protein kinases ATP-binding region signature. 109 131 IPR017441 GO:0005524
Stsc212439g00001 453 FunFam Putative receptor-like protein kinase 70 179 - -
Stsc212439g00001 453 ProSitePatterns Serine/Threonine protein kinases active-site signature. 233 245 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212439g00001 Stsc-Chr212439 672 2051 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212439g00001 1 403 Receptor kinase-like Gene Family AT5G20050 65.926 0.0 517
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Stsc212439g00001 Pkinase 7.6e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212439g00001 - - gmx:100779485 659.448