Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212435g00003 ATGGTGTACCACCCCACCGTTCTCTTCTACTCTTTCCACCAACTCAATGCATCCACCACCACCATCTCCAACCATCTCAAGAAATCTCTCTCCCATGCCCTGACACATTTCTACCCTCTTGCCGGCCGGATCAATGGCGATGAGGGCTTCGTTGACTGTACCGACGACGGTGTACCTTTTATAGAAACAAAAGTGAAGAATTGCAAGCTTGCTGAAGTTATTAATAATCCAATTCCTGGAGAATTGAACGATCTAGTTCCATTCAAACTGAACAACATAATCAACATTATATTTGGAGTACAGCTCAACGTGTTTGACTGCGGCGGCATCGCAATCGGCACGTGTCTTTCACACCAAATTGCCGACGGCTTATCAGTCTTCAAGTTCCTCAATTCCTGGGCTTCCCTTGCCACCAAAAAATCAAACTTACCAAATCCACAATTTCTTTTATCAAAGCTTTTTCCACCGATAAACACCTCCGGCTACGATCCGAGAAGTGGCATAACGATGGAGAATGTGGTGTGCAAGTTGTTCGTGTTCAATTCAAGCGTTGTTGAAACCCTAAGGGAAAAATATGCAATGGAAAACAATGGTGATGATAATGATGGCGAAGAGAAAAGGACAAGTCGTGTTGAGGCTTTATTTGCATTCATTTGGAGCCGGTATGTGGCAGTTACCAGAGATCACAAGAGTTGTTATGAAGACAAGGGGAGGAGAACGCATATTGTGATCCATGCTGTGAATCTAAGGCCAAAGATGGAACCACCGTTGCCGGAAGATTCGTTTGGGAACTACTATCGAATTTCCATGACAATTCCATCTTTGGACGAGGAAGAAAAGTGTCATGGATTTGTGAAGCAGGTAAGGGATCAAATAAAGAAGATTGACAAGGAATACGTTAGAAAACTTCAAGAGGGAAAAGAGCATTTGATTTTCCTTATTGATAGTTCAGAAAGGATTCTTGTGGGGGGAGAATTGGTTCTATTTAGCTTCACAAGTCTATGTAGGTTTCCTCTCTATGATGTTGATTTTGGTTGGGGCAAACCAACATGGGTAGGTTTACCTGCCTTAACTTTTAAGAATCTTGTAGTGTTTTCTGACACTAAGATTGGTGGTGCCATTGAAGCCTATGTTAGCTTGAGCATGGAAGATATGGCAAAATTTGAAGCAGATAAGGAGATGCTTGCTTGTGTTAACAAGGAGAATAATAAGCCATAG 1218 0.4228 MVYHPTVLFYSFHQLNASTTTISNHLKKSLSHALTHFYPLAGRINGDEGFVDCTDDGVPFIETKVKNCKLAEVINNPIPGELNDLVPFKLNNIINIIFGVQLNVFDCGGIAIGTCLSHQIADGLSVFKFLNSWASLATKKSNLPNPQFLLSKLFPPINTSGYDPRSGITMENVVCKLFVFNSSVVETLREKYAMENNGDDNDGEEKRTSRVEALFAFIWSRYVAVTRDHKSCYEDKGRRTHIVIHAVNLRPKMEPPLPEDSFGNYYRISMTIPSLDEEEKCHGFVKQVRDQIKKIDKEYVRKLQEGKEHLIFLIDSSERILVGGELVLFSFTSLCRFPLYDVDFGWGKPTWVGLPALTFKNLVVFSDTKIGGAIEAYVSLSMEDMAKFEADKEMLACVNKENNKP 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212435g00003 405 Pfam Transferase family 2 394 - -
Stsc212435g00003 405 Coils Coil 285 305 - -
Stsc212435g00003 405 Gene3D - 1 161 IPR023213 -
Stsc212435g00003 405 PANTHER F21J9.9 2 396 - -
Stsc212435g00003 405 Gene3D - 170 400 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212435g00003 Stsc-Chr212435 15436 18731 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212435g00003 3 389 Monolignol Biosynthesis Gene Families AT5G48930 24.882 2.30e-26 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212435g00003 K13065 - gmx:102670206 534.258