Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212424g00004 ATGGAATCCTGGGCGGTTATGCTTCATTACAAGAACACCATCTTCTTCACTTTCAAGTGCAACACAACACCACCACCAACAATAATGGAGTTTCTTGGAGAAGAAGACATGACCATGAATAATAATAATCCTATCCCTCATGATGAGCACCAGCACCACCATGATCATAAACAAGATGATTTCAAGTTTGACAACTCGCTCTTAGAAGACTTCACCTTTTACCCTGATCCTCAAAAGACACAACCACCATTGTTGTTGCCACAAAGGCATGTTGCACCGTCGTCGCCACGGCCGCCTCCTTCTTTGGCATCATCTTGGGAGCTTCTCAGCAATTACGGAAGCAGATTCCAGAGGCTAAGACGGAGCGGTGCCGGTGCTGAAGCTAAAACAACCACCGGCATTGGCCCAAAGAAGTTATCAACAGAGGAAATAATAAGATTGGCAGGAGCAAGGTATGTGCAGTACTCTTCACAAAATTGGTGCATGCCCATGTTTCCTTATGCCCAAATTGGTAATTTCATGGTGTTGTCTGAGGAGGAAAACAAGGACATTGATCTTGCCCAACTTCTTCTGGCTTCAGCTGATAAGGTTGGGTGCCAACAATTCGAACGTGCTAATTCATTGCTCCTCCAATGCCAATGGAATTCATCACGTGCTGGTAACACTGTTCATAGACTTGTCTTTCACTTCTCTTCTGCACTCAGAGAAAGGCTGAATAGAGAGATTGGAGGGATTGCATTACAGAGGAATTCGCAGAGGGAGCTCATCGAAGCGTTGCAAATGGATCATAACTCTGCGATTACATGCCATCAGAAGCTACCCTTTAATCAAGTGATTCAATTTGTTGGTGTTCAAGCTATAGTGGATCATGTTGCATCAAAAACCAAGATTCATTTGATTGATCTTGCTCTTGGATATGGACTAATGGCTACAGTTCTTATACAAGCTCTGGCCGAGCGAAGCGAGAAGCCGGTCGAGCTTCTTAAGATAACTGCCATTGGTTATGGAAGCAAGAGGGTGCTTGATGAGGCTGGGAGGAGGTTGGTGAGTTTTGGTAACTCCTTGAACTTGAGAATCTTGTTTAAGACAGTTTTTGTTGAAGACATTAGAGAGTTAAGGGAAGACCATTTCGAGATTGAGAATGATGAAGCTGTGGCTCTTTACTCTCCCAATATCCTTAGGACTTTGGTTTCAAGTCCTGATTCATTGGACAACTTGATGAGGGTGATGAGGAAGACTAAGCCGGCTATTATGCTTGTTAATGAGATTGAAGCAAACCACAACTCTCCATTGTTTGTGAATCGATTCATTGAGTCATTGTTTTACTTTTCAGCATATTTTGATTACCTTGGAACATGCCTGGGTCAGGATAATGAGAGCAGGATGAGAATGGAAGCAATAGTATCGGAAGGAATACGAAACAATGTTTCATTGGATGATAAAGAGAGGGAAATTAGGAATGTGAAGATAGATGTTTGGAGAAGATTCTTTGCGAGGTTTAGAATGGTGGAAACTGAATTCAGTGAGTCATCACTGTACCAAG 1543 0.4284 MESWAVMLHYKNTIFFTFKCNTTPPPTIMEFLGEEDMTMNNNNPIPHDEHQHHHDHKQDDFKFDNSLLEDFTFYPDPQKTQPPLLLPQRHVAPSSPRPPPSLASSWELLSNYGSRFQRLRRSGAGAEAKTTTGIGPKKLSTEEIIRLAGARYVQYSSQNWCMPMFPYAQIGNFMVLSEEENKDIDLAQLLLASADKVGCQQFERANSLLLQCQWNSSRAGNTVHRLVFHFSSALRERLNREIGGIALQRNSQRELIEALQMDHNSAITCHQKLPFNQVIQFVGVQAIVDHVASKTKIHLIDLALGYGLMATVLIQALAERSEKPVELLKITAIGYGSKRVLDEAGRRLVSFGNSLNLRILFKTVFVEDIRELREDHFEIENDEAVALYSPNILRTLVSSPDSLDNLMRVMRKTKPAIMLVNEIEANHNSPLFVNRFIESLFYFSAYFDYLGTCLGQDNESRMRMEAIVSEGIRNNVSLDDKEREIRNVKIDVWRRFFARFRMVETEFSESSLYQ 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212424g00004 514 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 142 510 IPR005202 -
Stsc212424g00004 514 MobiDBLite consensus disorder prediction 82 103 - -
Stsc212424g00004 514 ProSiteProfiles GRAS family profile. 177 514 IPR005202 -
Stsc212424g00004 514 Pfam GRAS domain family 187 511 IPR005202 -
Stsc212424g00004 514 MobiDBLite consensus disorder prediction 39 59 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212424g00004 Stsc-Chr212424 17646 19188 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212424g00004 174 498 GRAS Transcription Factor Family AT1G66350 27.914 1.99e-33 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Stsc212424g00004 GRAS 4.5e-59 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212424g00004 - - aip:107615215 719.924