Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212423g00004 ATGGTAGACAGTGTTGTTACCTTTGCTCTCGACAACTTGTCGCGGTTGCTTGCTAGTGAAGTAACATTGCTTTCGGGCGTGAAGGATCAAATTAGATCCCTAAGTGATGAATTGAAGTTCATGAATATCTTCATCAAGAGTTCTGAGGGAAAGCGCCATGATCCGGTGGTGAGAGAAGTGGTGAACCAGATCGTAGATGCGGCATACGAAGCTGAAGATGTGGTAGACACCTATGTGGTCAATGTCAACAAGCAAAGAAGTAGAAACATGTTGAGCAAGTTCTTCCATAGCAAAGACCATGTGATGATGCTCCATGAGGTGAATGGTCAGATTAACAACATTAAGAGGAGGATCGACGAGATCTATCAAAACAAGTCCAAATATGGCATCCAACAAGGTGATTTTGAAAGTCATATTGAAAACAAAGAATTTGCAAAAGACTTATTGCTTGCTAGAAGGAGGGATGTGGAAGAAGAAGAGGTAGTAGGCTTGGTGCATGACTCCGATGAGGTGATTAGGCAACTTGAGAGAGGAAGTTCGAGTCGTAGTGTTGTTTGCATATTAGGCATGGGTGGTTTGGGAAAGACTACTCTCGCTCGAAAGATCTACAACAGCGACAAAATGAAGCGCATGTTCTCATGTTGTATGTGGAGTTTTGTGTCCAATGACTACAGAGCTCAAGAATTCTTATTGAGTCTTTTGAAGCATTTGAGTTTATCCACAGAGGTTACTGATCAAGAGAAAATGAAAAGAAAGATTAGAGAACACCTGAGTGGAAAGAAGTACCTGCTAGTGCTAGACGACATTTGGAAAACTCAAGTGTGGGATGAGTTGCAAGAAGCCTTTCCTGATGACAACAATGGCAGCAGAATATTGATAACCACACGTGTGGAGGAGATTTCCCACTATACAAGAGCAACCTTCACATACAGACTCCCATTTCTTGATCAAAGTCAGAGTTGGGAACTTTTCTGTAAGAAGGTGTTTTGCAAAGAAGAATGTCCTGATGAACTTGAAACTCTTGGCAGAGAAATGGCAAATGCCTGCAAAGGTTTGCCACTTGCCATTGTTGTGTTGGCTGGTATAGTTGCAAAGAAAGAAAGGTCCCCAAGAGAATGGAATAAAATAAAGAATCATGTTTCTTGGCACTTTGATCAAGAGGACTATAGAATTGTGAATGATATTCTGAAGCTTAGCTATGATGACCTTCCTCATGCATTAAAGCCTTGCTTTCTTTATTTGGGTGTGTACCCTGAAGATTATGAAATCCGTGTGAGAGAATTGTGCCAATTGTGGATAGCTGAAGGGTTCATTCAGGCAAACCAAGTTGGAGCATCCAATTCACCGGAATTAGAAGATATTGCTGACATGTACTTTGATAAGCTTGTGGAACGTAGCTTGGTGCAAGTGGCAAGTAGGAGGAGTGATGGGGGTGTGAAGACATGTAGAGTCCATGATCTTCTTCGTGACCTCTGCATTTTAGAGAGCACAGAAAACAAGTTTATGAAAGTGTGCAGGGAGTTGGATAATAACAAGTGCAATCCCCGTAGGATGTCTCTCCAGTATACAACAACTCAATTTTTGTCAACCAAAAAAGATCAATCACATGCACATACGCGTTCTTTGCTCCGTTTTGGTGAATGGATTGGAGTCGAAACAAAAGGGTGGAATCAGGTAAGGAATAACTTCAAGTTGGCTCGTGTATTGTACATGAACAAAGTGTGGTTGCATTTATCAACTTTTAGTGGATTGAAACTGAACACATTGATCCATCTAAGGTATTTGAAAGTGCAAATAGATTCTGCAAGTTGTATACATGAAGATGTTTTAGATTCTATATGCAATCTTTGGAATCTAGAAACGTTGCATTTGAAGTTTAATCATGAGGCTAGTCCTTCTAGCATACCAAGCAAAATATGGAAGCTCAAGTCACTCAGGCATTTTTGTTTACGTCTTTACACAGCACGAGGGCGGCGGGGAGCATCATTGTCGGGGATGAAAATTGGAGACACACCAGTGGAAAATCTCCAAACTCTTGGTGAAATCTATCTTAATCCAGAAACAGCAAGCGTCCTAAACATGAACATGTTCCCCAACTTGACAAGATTGACTTTACGTGGAGAGTGGGATCGACAAGGAAAAGAACCATTATTAGGGAAGATTTTACAGTGCCTAAACAAACTCCGTAAGCTAAAGCTAGTTGCCATCAGGGATTTTCCATTAGATCCGAATGTATTTCCTTCAAGTCTTACCAAGATTACCATAATTCATGATGATTCTAAAATGAATTCAAGATTCATCGAGACTCTAGGAAAGCTTCTCAACTTGCAAATCTTGAAGGTACGATCCGGATATCTGGATGGCGTTGTTAATTGCGCTGCTGGAGACTTCCCACAGCTTCAAGTGTTTCGTTTGACCGATTTTATTGGCCGGTGGAAAATAGAGGAAGGAGCAATGGCTCACATTCGACAATGCAACATCCCTGAAGACATGCTTATCCGTGACTAA 2508 0.4115 MVDSVVTFALDNLSRLLASEVTLLSGVKDQIRSLSDELKFMNIFIKSSEGKRHDPVVREVVNQIVDAAYEAEDVVDTYVVNVNKQRSRNMLSKFFHSKDHVMMLHEVNGQINNIKRRIDEIYQNKSKYGIQQGDFESHIENKEFAKDLLLARRRDVEEEEVVGLVHDSDEVIRQLERGSSSRSVVCILGMGGLGKTTLARKIYNSDKMKRMFSCCMWSFVSNDYRAQEFLLSLLKHLSLSTEVTDQEKMKRKIREHLSGKKYLLVLDDIWKTQVWDELQEAFPDDNNGSRILITTRVEEISHYTRATFTYRLPFLDQSQSWELFCKKVFCKEECPDELETLGREMANACKGLPLAIVVLAGIVAKKERSPREWNKIKNHVSWHFDQEDYRIVNDILKLSYDDLPHALKPCFLYLGVYPEDYEIRVRELCQLWIAEGFIQANQVGASNSPELEDIADMYFDKLVERSLVQVASRRSDGGVKTCRVHDLLRDLCILESTENKFMKVCRELDNNKCNPRRMSLQYTTTQFLSTKKDQSHAHTRSLLRFGEWIGVETKGWNQVRNNFKLARVLYMNKVWLHLSTFSGLKLNTLIHLRYLKVQIDSASCIHEDVLDSICNLWNLETLHLKFNHEASPSSIPSKIWKLKSLRHFCLRLYTARGRRGASLSGMKIGDTPVENLQTLGEIYLNPETASVLNMNMFPNLTRLTLRGEWDRQGKEPLLGKILQCLNKLRKLKLVAIRDFPLDPNVFPSSLTKITIIHDDSKMNSRFIETLGKLLNLQILKVRSGYLDGVVNCAAGDFPQLQVFRLTDFIGRWKIEEGAMAHIRQCNIPEDMLIRD 835
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212423g00004 835 Gene3D - 5 119 - -
Stsc212423g00004 835 SUPERFAMILY L domain-like 485 806 - -
Stsc212423g00004 835 Pfam Rx N-terminal domain 5 95 IPR041118 -
Stsc212423g00004 835 Coils Coil 104 124 - -
Stsc212423g00004 835 Gene3D Ribonuclease Inhibitor 558 826 IPR032675 -
Stsc212423g00004 835 FunFam Probable disease resistance protein At1g61300 148 307 - -
Stsc212423g00004 835 Gene3D - 140 307 IPR027417 -
Stsc212423g00004 835 CDD RX-CC_like 3 121 IPR038005 -
Stsc212423g00004 835 Pfam NB-ARC domain 168 402 IPR002182 GO:0043531
Stsc212423g00004 835 FunFam Probable disease resistance protein At1g63360 400 494 - -
Stsc212423g00004 835 Gene3D - 405 493 IPR036388 -
Stsc212423g00004 835 PRINTS Disease resistance protein signature 184 199 - -
Stsc212423g00004 835 PRINTS Disease resistance protein signature 256 270 - -
Stsc212423g00004 835 PRINTS Disease resistance protein signature 349 363 - -
Stsc212423g00004 835 PANTHER DISEASE RESISTANCE PROTEIN RP 33 805 IPR044974 GO:0006952
Stsc212423g00004 835 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 146 414 IPR027417 -
Stsc212423g00004 835 Gene3D - 314 404 IPR042197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212423g00004 Stsc-Chr212423 12108 14812 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212423g00004 160 491 WRKY Transcription Factor Family AT5G45050 23.167 1.33e-09 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212423g00004 - - aip:107635641 1086.25