Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212423g00002 ATGGCAGACAGTGTGGTGAGCAGCATTGTTAATCTGGCAGTGGATAACTTGTCAAGGCTACTCATTGATGAAGTGAATTTACTTTCTGGTGTGAAAGATGATATTACTTCTCTGAGCAACGATCTCAGGTTCATGGCAGCCTTCCTCAAGAACTCCGAGGGGAAGCGCAGCAATGAATTAGTGAGAGAAATGGTGAACCAGATCAGAGAAGTGGCTTTCCAGTCCGAAGACACCATTGACATGTATGTTGTCAACGTTGCCAGGCACAAAAGCTTAAACAAGTTGCGGAGGTGCTTTCACTCAGTAGGCCACGTGTCGATGCTCCACGAGGTGAATGCTCAAGTTAAAGCAATCAAGTCCACTCTTGAAGGTATCTATAAAAACATAGCCATTTATGGCATTGATGAAATGGATTTCAAGAGTAGTGGTGCTACAGAAGGAGCCGGTGTAGAGTATGTTCATAGGAGAAGGAGAGACGTGGAAGAAAAAGAAGTGCTCAGAGAACCAGATCCTAATCTGAATGTGGTTTCCATAATTGGCATGGGTGGATTGGGAAAGACCACTCTTGCTAAGAAGGTCTACAACAAGGATGAGTTGAAGAACATGTTTGATTGTTGTGCATGGAGTTATGTGTCCAATGATTATATAATTAGAGATCTACTTTTGAGCCTTTTGAAATGCTTGAAGCCATCCATAGTTGAATGTAAAGATTTGAGTGTGGAGGAACTGAAGGATAAGCTAAGTGAGTGCTTGAAGGGGAAGAAGTATTTGGTGGTGCTTGATGACATTTGGAAAACTCAGGTGTGGGATGAGTTGAAAGGGGCATTTCCAGACGACAGAAATGGGAGTAGAATAATTATAACAAGTCGTCTAAGAGAGGTGGCATTGTACAGTCGCGCATCCTTTGTGTATGACCTTCCCTTCCTTGATGAAGAAGTAAGTTGGAAGTCTTCTCCAAGAAGATCTTTGGAGATAAAGAGTGTCCATCTGATCTAG 996 0.4267 MADSVVSSIVNLAVDNLSRLLIDEVNLLSGVKDDITSLSNDLRFMAAFLKNSEGKRSNELVREMVNQIREVAFQSEDTIDMYVVNVARHKSLNKLRRCFHSVGHVSMLHEVNAQVKAIKSTLEGIYKNIAIYGIDEMDFKSSGATEGAGVEYVHRRRRDVEEKEVLREPDPNLNVVSIIGMGGLGKTTLAKKVYNKDELKNMFDCCAWSYVSNDYIIRDLLLSLLKCLKPSIVECKDLSVEELKDKLSECLKGKKYLVVLDDIWKTQVWDELKGAFPDDRNGSRIIITSRLREVALYSRASFVYDLPFLDEEVSWKSSPRRSLEIKSVHLI 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212423g00002 331 Pfam NB-ARC domain 165 316 IPR002182 GO:0043531
Stsc212423g00002 331 Gene3D - 9 111 - -
Stsc212423g00002 331 PRINTS Disease resistance protein signature 250 264 - -
Stsc212423g00002 331 PRINTS Disease resistance protein signature 175 190 - -
Stsc212423g00002 331 PANTHER DISEASE RESISTANCE PROTEIN RP 45 316 IPR044974 GO:0006952
Stsc212423g00002 331 FunFam Probable disease resistance protein At1g61300 157 301 - -
Stsc212423g00002 331 CDD RX-CC_like 8 125 IPR038005 -
Stsc212423g00002 331 Gene3D - 141 301 IPR027417 -
Stsc212423g00002 331 Pfam Rx N-terminal domain 10 94 IPR041118 -
Stsc212423g00002 331 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 164 316 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212423g00002 Stsc-Chr212423 7830 8863 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212423g00002 176 310 WRKY Transcription Factor Family AT4G12020 28.169 5.14e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212423g00002 - - aip:107637450 328.561