Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212421g00002 ATGATCCTTATGGATGGCAATTTGGACAAAATTCAAGCAACTGTTGGAAATGTTGATGACAATGTATTCACTGATACAATCAAAGAGAAGGGAGTTTATCTTCTAAGTAATTTTTGGGTCATACCAAATGCTGGAACAACTCGAATCACGAAGCACAGATTCCAGATTCTTTTCCATAAGGAAACATCAGTCCTACCTTGTCCAGGTGCAGCAATTTCTGACAATGGTTTTACTTTGTATCCTATTGATGAACTCCGACAAGGTTGTATTGATTCCGATTACTTAGTTGATTTCATCGGTATCCTTTCTGGCTTCAAGAAATTGGCTAATATAGATATCAACGGTCATTCATATCCAGCAGTTGTTCTGCTTTTGTATGCTCATGGGAAAAATATCCAATGTAATATTGTGGGAGAGTTAGCTGGAGTCGTTGACCAAGATGTGCTCATGATGTACAACCGCCCACCTGTTATCTTATTGCAAAATTTTAAACTCAAAGTTGACCGAGATCTTGGGATTCTCCAAAATGTTTTCCATGTATCCAGAGTATTCATAAATCCTGATATCAAAGAGACCGTTGATTTCCTTAACAACTATGATATCGGCCGACAATATTTCCCAAGGCTGCAACGAACAAACACAGGGTCTCTTATCAGCCAAATTGATGATCCCACCTTTGATTGGAAATTACTTCGAACAGTGTTGAATTTAAAATCTACAAATGAGGAGGGTGTGTTCTTCCTTGTGGGTAAGATTATGGAAGTCATTGATGACCCTGAATGGTGGTATTTCAGCTGTGTGTGTGGACAGCCAATTATTGGGGATGACAATGTTTTTCGTTGTCAATCTTGTTCTGCAGACGTTGAGAATTTTACTGTCAATTATCGTGTCAAGTGCTATTACAAAATTGCTTGGGAAAACATGTTCAACTGCTTTTTTGGTCCCCCAAAAAAAACACAGTTTTCGTACTGCTCTCCTTTATTTAAGGACTTGCTGGGCCAAGAGAAGATTTTCAAAGTGCAGCGACGCAAGATCAATTCCCCTTGTTATCGTGGAACATTAAAAATTTTGGATGTTTATGGTGATGCATCTTCGTTCCCGACTCCTCCTACTGCAATAGCTTGCAATGTTGATATATCTTTCTTCCTTGGAAGCATTGTGTCTGTTGCAAGAGGCCAGAAATGGTTCTTCTTCTCCTGTCTCTGCGGAACACCTATATCTCATGTTGCAGACATTTATTATTGTTCCAGCTGCGGACTTGAATGTGTGAATGCAATTCCAAGTGCTGGCTAA 1293 0.3929 MILMDGNLDKIQATVGNVDDNVFTDTIKEKGVYLLSNFWVIPNAGTTRITKHRFQILFHKETSVLPCPGAAISDNGFTLYPIDELRQGCIDSDYLVDFIGILSGFKKLANIDINGHSYPAVVLLLYAHGKNIQCNIVGELAGVVDQDVLMMYNRPPVILLQNFKLKVDRDLGILQNVFHVSRVFINPDIKETVDFLNNYDIGRQYFPRLQRTNTGSLISQIDDPTFDWKLLRTVLNLKSTNEEGVFFLVGKIMEVIDDPEWWYFSCVCGQPIIGDDNVFRCQSCSADVENFTVNYRVKCYYKIAWENMFNCFFGPPKKTQFSYCSPLFKDLLGQEKIFKVQRRKINSPCYRGTLKILDVYGDASSFPTPPTAIACNVDISFFLGSIVSVARGQKWFFFSCLCGTPISHVADIYYCSSCGLECVNAIPSAG 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212421g00002 430 SUPERFAMILY Nucleic acid-binding proteins 77 205 IPR012340 -
Stsc212421g00002 430 SUPERFAMILY Nucleic acid-binding proteins 1 69 IPR012340 -
Stsc212421g00002 430 Pfam Domain of unknown function DUF223 1 69 IPR003871 -
Stsc212421g00002 430 Gene3D - 72 205 IPR012340 -
Stsc212421g00002 430 Gene3D - 225 303 IPR012340 -
Stsc212421g00002 430 CDD RPA1_DBD_A_like 1 64 - -
Stsc212421g00002 430 Gene3D - 1 69 IPR012340 -
Stsc212421g00002 430 SUPERFAMILY Nucleic acid-binding proteins 229 341 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212421g00002 Stsc-Chr212421 11525 15394 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212421g00002 3 310 Core DNA Replication Machinery Family AT5G08020 23.242 1.66e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212421g00002 - - adu:127742972 355.525