Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212413g00003 ATGGCTTCTGCTTGTGCTTCCTCTGCCATTGCAGCTGTTGCCATCTCTTCCCCAAGTTCTCAGAAGAATGGATCACAATTGGGAACAACAAAAGCTTCATTCCTTAGTGGAAGGAAGCTGAAGTTGAAGAACTTGACAGCACCAATAACTGGAGCAAGATCCACCACCACAGTGTGTGTAGCAGCTGATCCTGATAGACCTCTTTGGTTCCCCGGCAGCACTCCTCCGCCGTGGCTCGACGGTAGTCTCCCCGGAGACTTTGGATTTGATCCTCTAGGACTTGGATCTGACCCTGAGAGTCTAAGATGGAATGTTCAAGCAGAGCTTGTTCACTGCAGGTGGGCTATGTTGGGCGCCGCTGGCATCTTCATCCCGGAATTCCTAACCAAGATTGGTATCCTAAACACACCTTCATGGTACACTGCTGGGGAGCAAGAGTACTTCACAGACACCACCACACTCTTCATAATTGAACTCATCTTCATCGGCTGGGCCGAGGGACGAAGATGGGCTGATATCATCAAGCCAGGCTGTGTTAACACTGACCCTATCTTCCCTAACAACAAGCTCACTGGAACCGATGTAGGGTACCCTGGTGGCCTATGGTTCGACCCTCTCGGATGGGGAAGCGGTTCGCCTGAAAAGATCAAGGAGTTGAGAACAAAGGAGATCAAGAATGGAAGGTTGGCCATGTTAGCTGTGATGGGAGCATGGTTCCAGCACATTTACACCGGCACCGACCCTATCGACAACCTCTTTGCTCACCTTGCTGATCCCGGCCATGCTACTGTTTTCGCCGCTTTCACCCCCAAGTGA 816 0.5123 MASACASSAIAAVAISSPSSQKNGSQLGTTKASFLSGRKLKLKNLTAPITGARSTTTVCVAADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGEQEYFTDTTTLFIIELIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTDPIDNLFAHLADPGHATVFAAFTPK 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212413g00003 271 Gene3D Chlorophyll a/b binding protein domain 76 261 - -
Stsc212413g00003 271 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 26 269 IPR001344 GO:0009765|GO:0016020
Stsc212413g00003 271 SUPERFAMILY Chlorophyll a-b binding protein 61 269 - -
Stsc212413g00003 271 FunFam Chlorophyll a-b binding protein, chloroplastic 76 261 - -
Stsc212413g00003 271 Pfam Chlorophyll A-B binding protein 75 241 IPR022796 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212413g00003 Stsc-Chr212413 3298 5318 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212413g00003 46 271 Chloroplast and Mitochondria Gene Families AT3G61470 87.611 3.05e-150 418
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212413g00003 K08908 - gmx:100784089 511.916