Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212410g00001 TCATTTCAACAACAGCTACTTAGAAAACCTGAAGGGAATGAAGCATTCTTAGCGTATCAAGCTGGGCTCCAGGGTACCTTTGGGAATAACAATTTCTCATCTCCTGGTGCCATGCAATTGCCCCAGCAGTCTCGAAAGTTCATGGAATTAGCTCAACATGGTGCCAGCCAGGATGGCCAGTTTAGGGGCCAAGGTGTTGAGCAGCAAATGATGAATCCTATGCATCAAGCATACCTTCAATATGCTCTTGCACAGCAAAAATCTGCAATGGGAATTCAATCACAGCAGCAAGCTAAAATGGGAATGTTAAACCCTGCATCTCTGAAGGATCAGGAAATGCGCATGGGAAATCTGAAAATGCAGGAAATTATGTCTATGCAGGCTTTGCATCAAGCTCAAGGATCATCCTCTAGGAATTCTTCTGAACATATTTCACGCGGGGAAAAACAGATAGAGCCGGGACAGCAGACAGCTCCTGATCAGAAGACCGAAGGAAAGCCTTCATCCCAAGGACCAGCTGTTGGACACGTAATGCCTGGCAATATGGTGAGACCAATGCATGTGCCAGAATCTCAGCAGGGAATCCAAAATTTTATGACAATGTCTGCGCAATACCAGGCTATGCAGGCATGGGCACGTGAACGCAACATAGATTTGTCACATCCTGCAAATGCTAACATAATGGCACAGCTCATTCCCATGATGCAGGCAAGGATGGCCTCCCATCAAAAGGTCAACGAGAGCAATGTTGGTGTTCAGTCAACACCTGTTCCTGTTTCAAGGCAACAAGTTACTTCTCCAGCTGTTGCAAGTGAGGGTTCTGGACATGCTAATTCCTCAAGTGAAGCATCTGGGCAGTCAGGTTCTTCAAAAGCCAGGCAATCAGTTCCACCCGGCCATTTTGGCTCTGCATCAAATTCTGGTATAGGCAGTGGCTCCAGTGACATGGCAATGCAGCAACTTGGTGTTCAAGGAAGAGAGTCTCAAGCTTCTTTGAAGCAACCAGTCTCAGTTGGAAATGGGATGCCCGCTGTACATTCTCATCAGTCTTCTGCCAACAGGAACTCAGGTGCAGAACATCCTATGGGTGCAAAAACTTCGTCATCTGGTTCTGAACTGCCACAAATGCAAAACTTCAGGCAGTTAAACCAATCCTCTTCTCAGGCTGGAGTTCCAACAAATGAAGGTGGCTCAGGAAGTCATGCTAAATCTCAAGCGGCACCACCAGCTCAGATGCCTCAACAACGGGCAGGGAGTGCGTTTACCAAGCAGCAGCTTCATGTTCTTAAAGCACAAATACTTGCATTTAGGCGGCTGAAGAAAGGGGAAGGTACTCTGCCTCAAGAACTTCTACGAGCTATTTCTCCGCCGCCTCTGGAGATGCAGGTGCAACATTCAAATCATTCCACAGGGGGACAAAATCAAGATAAATCTTCTGGCAGTATGACGGCAGAACAACCAAGGCACACTGAACCCAATTCCAAGGATTCACAATCTATCCCAGGTTTTAGTGGACAAAGTTCTTTAAAGCAGGAACCCTTTCCCAGAGAAGAGAAATCCACTGTACCATCGGTTCCTGCACAAGCTGTTTTGTCACCTGCACCAAAGGAATCTGCTCCCGCATTATCTGCCGGAAAGGAAGAGCAGAAAGCAGTTGCATGCCCTGACAAGTCAGACCAAGACAGTGATCGTGGAAAGAACAAAACTCCTCTTAGGAATGATTTAGCATTAGATAGGGGAAAGGCTGTTGCACCGCAGGCTTCTGTATCCGACTCAACACAAATTAAGAAATCAGCACAAACAAGCACTGTTTCCCAGCCAAAGGATGCGGCATCTACTAGAAAATATTGCGGACCCTTATTTGATTTCCCTTCATTCACTAGGAAACATGATTCTTTTGGGTCATCGATGATGGTTAACAATAATAATAATCTGTCACTGGCGTATGATGTCAAAGATCTTCTTTTTGAGGAAGGCATGGAAGCACGTTTAAGGGATGAGATCGATCAACAGCAACAAGAGATAATGGCAATGCCGGATAGGCCGTATCGTAAGTTTGTAAGGCTGTGTGAGCGTCAGCGTATGGAACTGGCTAGACAAGTGCAGGCAACTCAGAGAGCCTTGAGAGAGAAGCAGCTTAAATCTATATTTCAGTGGCGTAAAAAGCTGCTTGAGACGCATTGGGCTATTCGTGATGCCCGTACTGCCCGCAACAGGGGTGTGGGTAAATATCATGAGAGGATGATGAGGGAATTTTCAAAACGTAAAGATGATGACAGAAACAAAAGGATGGAAGCCTTAAAGAATAATGATGTTGACCGATATAGAGAGATGTTACTGGAGCAACAGACTAGCATGCCAGGCGATGCTGCAGAAAGATATGCTGTTCTCTCAACTTTCTTAAGTCAGACAGAAGAGTATCTGCATAAATTAGGAAGCAAGATAACTGCTGCCAAAAATCAACAGGAAGTGGAGGAGGCGGCAAAATCTGCTGCTGCTGCTGCACGATTGCAGGGTCTATCTGAGGAAGAAGTAAGAGCTGCTGCAGCTTGTGCAGGGGAGGAAGTAATGATTAGAAATCGTTTTCTGGAGATGAATGCTCCTAGGGACAGTTCATCAGTCAACAAGTATTACAACCTAGCTCATGCTGTGAGTGAAACTGTCATTAGGCAACCATCAATGTTACGTGCTGGAACATTGAGAGACTATCAACTTGTTGGTTTACAATGGATGCTTTCTTTGTACAATAACAAGTTGAATGGAATTTTGGCGGATGAGATGGGTCTTGGCAAAACTGTGCAGGTTATGGCATTGATTGCATACTTGATGGAATTTAAAGGAAACTATGGCCCACATCTTATAATAGTCCCGAATGCTGTTTTAGTCAACTGGAAGAGTGAGTTTTATAATTGGCTACCATCTGTGTCATGCATTTTTTATGTTGGAAGCAAGGATCAAAGATCAAAATTATTTTCACAAGAGGTTTGTGCTATGAAGTTTAATGTACTTGTAACTACTTATGAGTTCATCATGTATGATCGATCAAAGCTTTCAAAAGTCGATTGGAAGTATATTATAATTGATGAAGCGCAGAGAATGAAGGATAGGGATTCGGTCCTAGCCCGTGATCTTGATAGATACCGTTGTCAAAGGCGCCTGCTTTTGACAGGAACACCATTACAGAATGATTTGAAGGAGCTCTGGTCACTCTTAAATTTACTTCTTCCTGAGGTTTTTGACAATAGGAAAGCCTTCCATGATTGGTTCTCTAAACCATTTCAAAAGGAAGGTCCTGCTCCAACCCAAAATGGGGAGGATGATTGGCTTGAGACTGAAAAGAAAGTTATCATTATCCACCGGCTTCATCAGATTCTTGAGCCTTTCATGCTCAGGCGTCGTGTTGAAGATGTTGAAGGCTCACTTCCACCTAAGAGTCTGCATAATTTGGGGTTGAGAAAGTTCTTACTAGCTGCAATTGGACCACTTGGATGCATACCAAATCAAATATCCCGAGGCATTTTTCCTACAGGAGCGTGCAAGGATGAAGTTAACGCTATGGTTACATTGTTTAATGATAGATTGAAATCCTTGGTTGATGAACTCAACGCACAATACAATGGTTCCTCAATTTTTGTTTATGGCAACACTTTTGCAGCACTCATGCAAATTATACAAGACCCAATTGCTTACGGTTTTGTTACGACTAATAGAGCTTGCTGTGGCATTGGAAGGTATAAAGGAATGATAAGTTGCTTACCATATTCCATACCATGTAGCAATAGAGACCAATATGTGTTCTGGGATGCCTTTCATACCTCAGAAGCTGTAGATAGAATTCTTGCTTTAAAGGCATTCAATGGATCAACCTCTGATGTTTACCCAGTTAATGTGTCTCAGATGGCAATAATGTTCTAA 3915 0.4373 SFQQQLLRKPEGNEAFLAYQAGLQGTFGNNNFSSPGAMQLPQQSRKFMELAQHGASQDGQFRGQGVEQQMMNPMHQAYLQYALAQQKSAMGIQSQQQAKMGMLNPASLKDQEMRMGNLKMQEIMSMQALHQAQGSSSRNSSEHISRGEKQIEPGQQTAPDQKTEGKPSSQGPAVGHVMPGNMVRPMHVPESQQGIQNFMTMSAQYQAMQAWARERNIDLSHPANANIMAQLIPMMQARMASHQKVNESNVGVQSTPVPVSRQQVTSPAVASEGSGHANSSSEASGQSGSSKARQSVPPGHFGSASNSGIGSGSSDMAMQQLGVQGRESQASLKQPVSVGNGMPAVHSHQSSANRNSGAEHPMGAKTSSSGSELPQMQNFRQLNQSSSQAGVPTNEGGSGSHAKSQAAPPAQMPQQRAGSAFTKQQLHVLKAQILAFRRLKKGEGTLPQELLRAISPPPLEMQVQHSNHSTGGQNQDKSSGSMTAEQPRHTEPNSKDSQSIPGFSGQSSLKQEPFPREEKSTVPSVPAQAVLSPAPKESAPALSAGKEEQKAVACPDKSDQDSDRGKNKTPLRNDLALDRGKAVAPQASVSDSTQIKKSAQTSTVSQPKDAASTRKYCGPLFDFPSFTRKHDSFGSSMMVNNNNNLSLAYDVKDLLFEEGMEARLRDEIDQQQQEIMAMPDRPYRKFVRLCERQRMELARQVQATQRALREKQLKSIFQWRKKLLETHWAIRDARTARNRGVGKYHERMMREFSKRKDDDRNKRMEALKNNDVDRYREMLLEQQTSMPGDAAERYAVLSTFLSQTEEYLHKLGSKITAAKNQQEVEEAAKSAAAAARLQGLSEEEVRAAAACAGEEVMIRNRFLEMNAPRDSSSVNKYYNLAHAVSETVIRQPSMLRAGTLRDYQLVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSEFYNWLPSVSCIFYVGSKDQRSKLFSQEVCAMKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRDSVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSKPFQKEGPAPTQNGEDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKSLHNLGLRKFLLAAIGPLGCIPNQISRGIFPTGACKDEVNAMVTLFNDRLKSLVDELNAQYNGSSIFVYGNTFAALMQIIQDPIAYGFVTTNRACCGIGRYKGMISCLPYSIPCSNRDQYVFWDAFHTSEAVDRILALKAFNGSTSDVYPVNVSQMAIMF 1304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212410g00001 1304 MobiDBLite consensus disorder prediction 550 575 - -
Stsc212410g00001 1304 Gene3D - 868 1128 IPR038718 -
Stsc212410g00001 1304 Pfam SNF2-related domain 903 1149 IPR000330 GO:0005524|GO:0140658
Stsc212410g00001 1304 MobiDBLite consensus disorder prediction 241 336 - -
Stsc212410g00001 1304 Pfam QLQ 420 454 IPR014978 GO:0005524|GO:0005634|GO:0006355
Stsc212410g00001 1304 MobiDBLite consensus disorder prediction 461 611 - -
Stsc212410g00001 1304 SMART ultradead3 896 1085 IPR014001 -
Stsc212410g00001 1304 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 912 1077 IPR014001 -
Stsc212410g00001 1304 SMART QLQ_2 419 456 IPR014978 GO:0005524|GO:0005634|GO:0006355
Stsc212410g00001 1304 Coils Coil 694 714 - -
Stsc212410g00001 1304 ProSiteProfiles QLQ domain profile. 420 456 IPR014978 GO:0005524|GO:0005634|GO:0006355
Stsc212410g00001 1304 Pfam GDSL-like Lipase/Acylhydrolase 1145 1281 IPR001087 GO:0016788
Stsc212410g00001 1304 MobiDBLite consensus disorder prediction 240 419 - -
Stsc212410g00001 1304 FunFam ATP-dependent helicase BRM 891 1141 - -
Stsc212410g00001 1304 MobiDBLite consensus disorder prediction 343 419 - -
Stsc212410g00001 1304 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 880 1132 IPR027417 -
Stsc212410g00001 1304 MobiDBLite consensus disorder prediction 461 511 - -
Stsc212410g00001 1304 Gene3D - 702 775 - -
Stsc212410g00001 1304 MobiDBLite consensus disorder prediction 586 610 - -
Stsc212410g00001 1304 Gene3D SGNH hydrolase 1129 1289 IPR036514 -
Stsc212410g00001 1304 MobiDBLite consensus disorder prediction 150 168 - -
Stsc212410g00001 1304 PANTHER SNF2/RAD54 HELICASE FAMILY 585 1148 - -
Stsc212410g00001 1304 MobiDBLite consensus disorder prediction 128 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212410g00001 Stsc-Chr212410 11249 18795 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212410g00001 1144 1300 Acyl Lipid Metabolism Gene Families AT4G10950 36.709 5.16e-29 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Stsc212410g00001 SNF2_N 2.8e-58 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212410g00001 K11647 - gmx:100793092 1772.29