Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212392g00002 ATGTTTGGCCTGCCATATATTATTGCCCCAATGGAAGCTGAAGCACAATGTGCTTTCTTGGAAACTGCAAAACTGGTTGATGGTGTTATAACTGATGATTCTGATGTCCTTCTATTTGGAGCTCGTAGTGTTTACAAGAATATATTTGATGATCGCAAATATGTAGAGACATACTTCATGGAGGACATTGAGAAGGAACTTGGATTGAGCAGAGAAAAATTGGTACGCATGGCACTACTACTTGGGAGTGATTATACCGAAGGTGTAAGTGGGATTGGGATTGTCAATGCTATTGAGGTTGTGAATGCATTCCCTGAGGAAGATGGCCTCTTGAAATTCCGGAAGTGGGTTGAGTCACCAGATCCCACCATTCTTGGAAACTTGAATACAAAAAGTGGATCCAATACAAAAAAGAAAGGATCAAAAGAGCCTTTGTCAGACCAAATTATCAGTGATAGTAAGGAACTAGAGGGATTGCTGGATTATGACCAAGAAATCAAGCAAACCTTTTTTGAGAAACATAGAAATGTTAGCAAGAATTGGCATATTCCGTCTTCTTTTCCAAGTGAGACAGTTATATCTGCGTATTATTCTCCACAAGTTGACAAGTCAACTGCGTCTTTCACCTGGGGAAAGCCAGATCATCTTGTTCTTCGAAAATTGTGCTGGGAGAAATTTGGGTGGACTAGCCAGAAATCAGATGAATTACTAGTACCTGTTCTAAAGGAATATAACAAACACGAGACTCAACTTCGTTTGGAAGCGTTTTATAGTTTCAATGAGCGATTTGCAAAAATTCGTAGCAAGAGAATTACGAAAGCTGTAAGAGGGATTACTGGTAAGCAGCCTTCAGAATTGAAAGATGATGGGGACAAAAATTTTGAGAATCTAAAGGGGACAAAGGAAAGTCTTGAAAGTTTGAAGAAACCTAAAGTAAAACAATCAAGGAAAAGAAAGATTGATGGGGACACTCTTGGGAAGGCAATGTCAAAGAGAGAGACAACCACCGATGGTCCTTCTTCAGCTTCTGTTATGTCTGGAGAGGAGAATTTACATCCATCTACTCAGACCAAAAAAGACCAATGTGATAGTAATGCCTTGATTTCAAATAGAAGTGGGAGGGGAAGAGGAAGAGGCAGAGGTTTGGCATTAAAAAAAGAAAGGAAAAAGGAAAGTATCATTTATGAATCATCTGAAGCGTCATCTTCTAGTAGCGACACTGATGATCATGTTGATATGTCAGAAGTTCCTCAAGAGGTGCGAAGGTCCGCGCGCTCCAGAAAACCTGTTAATTATTCACTTGAGAACCTAGAAGAAGAAGAACTGAAGGATTCATTTGATACGAGGAATCAATCATGCTTGTGTGAAGATCCATTGGAAGAAAATTTATCTGATATTCCTGGTGCGTGTTCGGATGCTGCAACTGGTTTAAGCATATATAAAGAAAGTGATATGATAAATAGTGCTCAAACCAGGAACTTCCCTAGTGACCAACTTGAGTCAGAAGGTCAGCTTTTTATGGATGCTGATGAAACTAGTCATCCTGGGAGCAGTGATCATGATAATATTGTTAATGCTGGCCCCTGTGATGACTACCTTAAACTAGGAGGTGGTTTTTGTTTGGATGATAGTGATGAACGTAGCAATCAGAATGCAGTTGATGGTGCCAATACTACTGAAACTGAGGGATTTCCACACTGTTCTGTTATGCCAGTTGAGACTGACCGTGACAAAAATGGTTCTGATATGCTATTTTCTGGCACAGATAAAGCTCATAGCAAGATGCAAGAGGAGCACACTGCCTACAATGTTTACAAGGAGCCAAATGATAACCTTCCAAATGTTTGCAGTGCCAATGATCAACATGAAATGGGGGTCTCTGTACCTGAGAATATTAATCATAATAGTGGAAACTACAATGGGCTATTTAGTGCAATTCCATTTTTGAGGAAAAGAAGGAAGAACTAG 1968 0.3974 MFGLPYIIAPMEAEAQCAFLETAKLVDGVITDDSDVLLFGARSVYKNIFDDRKYVETYFMEDIEKELGLSREKLVRMALLLGSDYTEGVSGIGIVNAIEVVNAFPEEDGLLKFRKWVESPDPTILGNLNTKSGSNTKKKGSKEPLSDQIISDSKELEGLLDYDQEIKQTFFEKHRNVSKNWHIPSSFPSETVISAYYSPQVDKSTASFTWGKPDHLVLRKLCWEKFGWTSQKSDELLVPVLKEYNKHETQLRLEAFYSFNERFAKIRSKRITKAVRGITGKQPSELKDDGDKNFENLKGTKESLESLKKPKVKQSRKRKIDGDTLGKAMSKRETTTDGPSSASVMSGEENLHPSTQTKKDQCDSNALISNRSGRGRGRGRGLALKKERKKESIIYESSEASSSSSDTDDHVDMSEVPQEVRRSARSRKPVNYSLENLEEEELKDSFDTRNQSCLCEDPLEENLSDIPGACSDAATGLSIYKESDMINSAQTRNFPSDQLESEGQLFMDADETSHPGSSDHDNIVNAGPCDDYLKLGGGFCLDDSDERSNQNAVDGANTTETEGFPHCSVMPVETDRDKNGSDMLFSGTDKAHSKMQEEHTAYNVYKEPNDNLPNVCSANDQHEMGVSVPENINHNSGNYNGLFSAIPFLRKRRKN 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212392g00002 655 MobiDBLite consensus disorder prediction 282 330 - -
Stsc212392g00002 655 MobiDBLite consensus disorder prediction 281 427 - -
Stsc212392g00002 655 MobiDBLite consensus disorder prediction 550 580 - -
Stsc212392g00002 655 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 20 40 IPR006084 -
Stsc212392g00002 655 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 74 89 IPR006084 -
Stsc212392g00002 655 SMART xpgineu 1 69 IPR006086 GO:0004518
Stsc212392g00002 655 CDD PIN_XPG_RAD2 1 70 - -
Stsc212392g00002 655 MobiDBLite consensus disorder prediction 127 147 - -
Stsc212392g00002 655 MobiDBLite consensus disorder prediction 331 371 - -
Stsc212392g00002 655 CDD H3TH_XPG 72 203 - -
Stsc212392g00002 655 Gene3D - 69 125 - -
Stsc212392g00002 655 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 69 265 IPR036279 -
Stsc212392g00002 655 MobiDBLite consensus disorder prediction 550 564 - -
Stsc212392g00002 655 PANTHER DNA REPAIR PROTEIN COMPLEMENTING XP-G CELLS-RELATED 1 469 - -
Stsc212392g00002 655 ProSitePatterns XPG protein signature 2. 3 17 IPR019974 GO:0016788
Stsc212392g00002 655 Gene3D - 1 68 - -
Stsc212392g00002 655 SMART HhH_4 71 104 IPR008918 GO:0003677|GO:0003824
Stsc212392g00002 655 FunFam DNA repair protein UVH3 69 126 - -
Stsc212392g00002 655 MobiDBLite consensus disorder prediction 403 427 - -
Stsc212392g00002 655 Pfam XPG I-region 3 84 IPR006086 GO:0004518
Stsc212392g00002 655 SUPERFAMILY PIN domain-like 2 84 IPR029060 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212392g00002 Stsc-Chr212392 7801 13811 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212392g00002 1 157 Core DNA Replication Machinery Family AT5G26680 30.539 1.99e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212392g00002 K10846 - gmx:100820295 717.998