Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212383g00001 ATGGGAAGGTCTCCATGCTGCGATGAGAGTGGCCTTAAGAAAGGTCCATGGACTCCTGAAGAAGATCAAAAGCTTGTTTACCACATTCAAAAACATGGCCATGGAAGTTGGAGAGCACTTCCTAAGCTAGCAGGTCTTAATAGATGCGGTAAGAGCTGTAGGCTTAGATGGACCAACTATTTGAGGCCTGATATCAAGAGGGGCAAATTCTCTCAAGAAGAGGAGCAAACCATTCTCCATCTTCATTCCATTCTTGGAAACAAATGGTCTGCAATCGCGAGCCATCTTCCAGGGAGGACAGATAACGAGATAAAGAATTTCTGGAACACTCATTTGAAGAAGAAGCTGATTCAGATGGGTTTTGATCCAATGACTCATCAACCAAGAACTGACCTTGTTTCTACCCTCCCATATCTCTTAGCTTTGGCAAGCATGATGGATAATAATAATAATACATCAATTATTGATGAACATGCTCTGAGCTTACAAGCAGAGGCAATTCAAATGGCAAAGCTTCAGTATCTTCATTACTTACTCCAATCCTCCTCCTCTTCTTCCTCTTCATCATCAAATCCCAACTTTGCCTTTGACCAAAATAACCCCATCAACATCACAAACATGGAAGCTCCTTTCAGTTTGTTAAATGTGAAAGAGAATCATAATAATAATCCAAATCCATCAGTTATAATGGATGATAATACTAATAATAATGGAAATGGGATTATTATTGATGATGATAGTAGCTGTCAACCACTCCACTACTACCACCCAAACGTGCTATTATCTCACTCTTTAGACCCACCATCACAACAAGTCTCTTTCAACTCCCAATCATGTTTGAATAATATTAATGAGCAAGGTCAAGGTACTACTACTAACTATGCAATCATAAGTCAAATGGATCACACTGCAGATGATAATTCCTCGTGGATTGTTCCATCTTCTTCTCCATCATCTATTGCTCCAAACAATAATGGAGGATCTACTACTACTAGCAATAATAATAATAATACCCCAGGAGATACAAGCAGCACCACTTCTAGCTATGGAGGAGAAGGAGCACCTTCTTCCTCCTCTTCATATTGGTCTGAACTCTTTCTTGTGGACCCTGCTATCATGCATGAGCTACCTTAG 1134 0.3995 MGRSPCCDESGLKKGPWTPEEDQKLVYHIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSQEEEQTILHLHSILGNKWSAIASHLPGRTDNEIKNFWNTHLKKKLIQMGFDPMTHQPRTDLVSTLPYLLALASMMDNNNNTSIIDEHALSLQAEAIQMAKLQYLHYLLQSSSSSSSSSSNPNFAFDQNNPINITNMEAPFSLLNVKENHNNNPNPSVIMDDNTNNNGNGIIIDDDSSCQPLHYYHPNVLLSHSLDPPSQQVSFNSQSCLNNINEQGQGTTTNYAIISQMDHTADDNSSWIVPSSSPSSIAPNNNGGSTTTSNNNNNTPGDTSSTTSSYGGEGAPSSSSSYWSELFLVDPAIMHELP 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212383g00001 377 Gene3D - 13 66 - -
Stsc212383g00001 377 CDD SANT 69 112 IPR001005 -
Stsc212383g00001 377 CDD SANT 16 61 IPR001005 -
Stsc212383g00001 377 Gene3D - 69 116 - -
Stsc212383g00001 377 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Stsc212383g00001 377 FunFam MYB-related transcription factor 13 66 - -
Stsc212383g00001 377 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Stsc212383g00001 377 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Stsc212383g00001 377 FunFam Transcription factor MYB39 69 130 - -
Stsc212383g00001 377 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 258 - -
Stsc212383g00001 377 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Stsc212383g00001 377 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Stsc212383g00001 377 SMART sant 66 114 IPR001005 -
Stsc212383g00001 377 SMART sant 13 63 IPR001005 -
Stsc212383g00001 377 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Stsc212383g00001 377 MobiDBLite consensus disorder prediction 305 360 - -
Stsc212383g00001 377 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212383g00001 Stsc-Chr212383 9657 11159 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212383g00001 1 373 MYB Transcription Factor Family AT1G34670 51.680 2.09e-112 331
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc212383g00001 Myb_DNA-binding 1.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212383g00001 K09422 - gmx:100782792 407.527