Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212380g00001 ATGGGGAGGAAAGGGAGTTGGTTCTCTGTTGTGAGGAAAGTTTTTAGTAATGAAGGCAAAAAGGAACAGGAAAAGAACACAAAACCACAGAAAAACCATAGTCATGGCCATAGCCATAGCAATAGTAAGTCCAAGCTAGGATGTTTTGGACACCATGATCACCAAGAAGCTGATGCGCAGGGAGTAGTCATTGTTCCGGTCCTTCCCCGGAAGAAAGAACCAAAACAGGTAAAAGTGGTTGATCAGAATGAGCAGGAGGACCAGCAGGCTTTCTCTTTGGTCTTGGCTACTGCTGTGGAGACCGGTGCTGCTGTTGCGCCCGCGGATGAGGTTACTTGTAGCAAAAGAAAGACAACTCGTCGTCGCAAAAAATTGACTGAAGATGAAGCTGCAACCAAGATTCAGACAGCCTTCCTTGGACATCTGGCGAGGAAACAATTTCGGCGCATGAGAGGTTTGATGAGGTTGAGAACATTGATACGAGGGCAATCTGTGAAAAGGCAATCATCCTCTACCTTGCAATGTATGCAGACTCTTTCGAGGCTGCAGTCTCAAGTTCGCGCGAGGAAGATCAGAATGTCTGAGGAGAACCAGGCCCTTCAGCGCCAGCTCCTGCAGAAACGCGAGAAGGAGCTTGAGAAGTTGCAAGCTGCTCAAGTTGAATGGGACAGTAGAAAGGACTCAAAGGAGCAAGTTGAAGCAAAATTGTTGCACAGGCAAATTGCTACCATGAGAAGGGAAAAGGCTATGGCTTACTCAATGATACATCAGCAAACTTGGAGGACTAATCCGAAATCCGGCACGAACGCCTCGTTCATGGATCCAAACAATCCTCACTGGGGCTGGAATTGGCTTGAGAGATGGATGGCTGTAAGGCCATGGGAGGGACAAATCATGTTGCAATCAAATGAGCCTTCAACTCCAGGTAGCGCAGCGAGAAGCACACTATCGGTTGGCGAAATAACCAAATTGTATTCTCTTCGTGATGATGCTAATGTTAGCAAGAACTCGCCTCCTACGGTAAAAACAGTCCGTTCACGCAGCAGCCTCAACTCGCCCTCGACAGTACTCACCCCACAAAAGTCCACAGCCTCTTTTACCCCTTCCCCCACTCCAAGGAGTCTCAGGGCAGCAAGTCCTAAACTTGGTTCCTGGGGTGGTGATGGTGACAAGAAGAATGCATTTACCATTAAGAGGGATGGAAACCGAAGGCATAGCATCGCTGTTTCGCCGGTGAGGGAGGATGAGCTCCTTAACTCACCTATTTCCAGATCACCAAAGAGATCTGCAACAACAAAGTCCTCCAAATCCTTCAACTCGACGAAAAGCAGTGTTAGTACATCTGAGAAATCAAGTCCTGGTGCTTCAGCAAAGAAGAGACTCTCTTTGCCTTATTCTCCAACTGCAAATTCAAGAAGGCTTTCCACTCCAGGAAAGGTGGGAATGGTTTCCAAAAAGAGCAGTGTTTCTGGTACTACTAAATCTGATAGAAACTGA 1497 0.4743 MGRKGSWFSVVRKVFSNEGKKEQEKNTKPQKNHSHGHSHSNSKSKLGCFGHHDHQEADAQGVVIVPVLPRKKEPKQVKVVDQNEQEDQQAFSLVLATAVETGAAVAPADEVTCSKRKTTRRRKKLTEDEAATKIQTAFLGHLARKQFRRMRGLMRLRTLIRGQSVKRQSSSTLQCMQTLSRLQSQVRARKIRMSEENQALQRQLLQKREKELEKLQAAQVEWDSRKDSKEQVEAKLLHRQIATMRREKAMAYSMIHQQTWRTNPKSGTNASFMDPNNPHWGWNWLERWMAVRPWEGQIMLQSNEPSTPGSAARSTLSVGEITKLYSLRDDANVSKNSPPTVKTVRSRSSLNSPSTVLTPQKSTASFTPSPTPRSLRAASPKLGSWGGDGDKKNAFTIKRDGNRRHSIAVSPVREDELLNSPISRSPKRSATTKSSKSFNSTKSSVSTSEKSSPGASAKKRLSLPYSPTANSRRLSTPGKVGMVSKKSSVSGTTKSDRN 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212380g00001 498 Coils Coil 190 225 - -
Stsc212380g00001 498 MobiDBLite consensus disorder prediction 15 51 - -
Stsc212380g00001 498 SMART iq_5 126 148 IPR000048 GO:0005515
Stsc212380g00001 498 PANTHER IQ-DOMAIN 5-RELATED 1 470 - -
Stsc212380g00001 498 MobiDBLite consensus disorder prediction 329 498 - -
Stsc212380g00001 498 MobiDBLite consensus disorder prediction 15 31 - -
Stsc212380g00001 498 MobiDBLite consensus disorder prediction 422 455 - -
Stsc212380g00001 498 ProSiteProfiles IQ motif profile. 127 155 IPR000048 GO:0005515
Stsc212380g00001 498 MobiDBLite consensus disorder prediction 392 411 - -
Stsc212380g00001 498 MobiDBLite consensus disorder prediction 463 491 - -
Stsc212380g00001 498 MobiDBLite consensus disorder prediction 329 374 - -
Stsc212380g00001 498 Pfam IQ calmodulin-binding motif 129 148 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212380g00001 Stsc-Chr212380 3680 6437 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212380g00001 1 480 IQD Protein Family AT5G03040 39.960 2.54e-88 276
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212380g00001 - - gmx:100807725 427.557