Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212376g00003 ATGGCGCAGCAACCACTAGAGCAGGTGCAGTGCTTTGGCCGCAAGAAGACCGCCGTGGCTGTCACATACTGCAAGCGAGGCCGTGGTCTCATCAAGATCAACGGTTGCCCAATTGAGCTGGTGGAGCCGGAGATCCTGCGCTTCAAGGCGTTCGAGCCAATCCTTCTGCTCGGAAGGCAGCGATTCGCCGGCGTTGACATGCGCATCCGCGTGAAGGGAGGAGGACACACTTCTCAGATCTACGCCATAAGGCAGAGCATAGCGAAGGCTCTTGTTGCGTTCTACCAGAAGTACGTGGACGAGCAGAGCAAGAAGGAGATCAAGGACATTCTTGTGAGGTACGACCGAACCCTCCTCGTCGCCGATCCAAGGCGCTGCGAGCCCAAGAAGTTCGGTGGTCGCGGTGCTCGTGCTAGGTTCCAGAAGTCCTACCGTTAA 438 0.5753 MAQQPLEQVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRQRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212376g00003 145 SUPERFAMILY Ribosomal protein S5 domain 2-like 8 145 IPR020568 -
Stsc212376g00003 145 FunFam 40S ribosomal protein S16 1 145 - -
Stsc212376g00003 145 Pfam Ribosomal protein S9/S16 13 145 IPR000754 GO:0003735|GO:0005840|GO:0006412
Stsc212376g00003 145 PANTHER RIBOSOMAL PROTEIN S9 6 142 IPR000754 GO:0003735|GO:0005840|GO:0006412
Stsc212376g00003 145 Gene3D - 1 145 IPR014721 -
Stsc212376g00003 145 ProSitePatterns Ribosomal protein S9 signature. 73 91 IPR020574 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212376g00003 Stsc-Chr212376 10447 10884 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212376g00003 1 145 Cytoplasmic Ribosomal Protein Gene Family AT2G09990 87.671 6.02e-93 263
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212376g00003 K02960 - csin:114265741 281.567