Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212367g00003 ATGGCTGCTGGATCAGCTTCAGGATCAGGCTCAGGGTCAGCTGCTGTCGGTGCTGATGCATGGAAGGCTCATTTAGCCATGGCTATGGTGCAGCTCTTCTATGGTGGATACCATGTCATCACAAAAGTGGCCCTCAATGTTGGTGTCAATGAATTAGTCTTCTGTGTCTTCAGGGATCTCGTTGCCCTTTCTATTCTTGCTCCTGTCGCTTATTTCCATGAAAAGCGTACACGGCCCCCAATCACGAAGCGCCTTTTGCTGTCATTCTTCGTTCTTGGATTAACTGGGATATTCGGCAACCAGCTTTTGTTTCTTATGGGTTTAAGCTATACTAATCCAACATATGCTTCTGCAATACAGCCAGCCATTCCAGTCTTTACATTTCTGTTTGCTGTGATGATGGGTACAGAAAGAGTTAACTTGCTAAGATATGAAGGTATTGCAAAGATTGGAGGAACTATCATCTGTGTTTTTGGTGCTGTATTGATGGTTTTGTATCGAGGTCCAGCTCTGATAGGATATTCAGATCTAGACCATGTAGCAGTAAATGAAATTAGTGCCAGAGGTCAGCCAGAGCCAGCTGGATGGTTAATTGATGGTTTGCAAGATCTAGGACTAGATCGATTTCATGTTGGGGTTTTGTGTTTGATAGCAAACTGCATTTGCATGGCTGCTTTTTTGGCCCTTCAGGCACCATTATTGAAAAAGTATCATGCACACATATCTCTCACAGCATACTCGTACTTTTTTGGAGCTGTACTGATGGTGATATCATCGATATTCATGACAGATCTATCGGTTGACTGGACATTGAAGCAGTCAGAAATATTTGCCGTTGTTTATGCTGGAGTTATTGCATCTGCCCTTAATTATGGAATCATTACATGGAGCAACAAGATCCTGGGGCCAGCTTTGGTTTCCCTTTACAATCCCCTGCAACCAGCATTTTCTACCCTCCTGTCTCTAATCTTCCTTGGAAGTGTAATTTACTTGGGAAGTATCTTGGGGGGACTTTTCATCATTGCTGGCCTATATATTGTTACTTGGGGATCTTACAAAGAAAAACAAGCAAATGCTGGAGTTATTCCTATTAGCTCTTGGGTGTCTGAGCCACTTATTCATGACAAGAATGCATACCAGAAAGGTCACACTATTTCAGGGTCATCTAGCATTACCATTAATCCAAAATCATTGGATTAA 1200 0.4242 MAAGSASGSGSGSAAVGADAWKAHLAMAMVQLFYGGYHVITKVALNVGVNELVFCVFRDLVALSILAPVAYFHEKRTRPPITKRLLLSFFVLGLTGIFGNQLLFLMGLSYTNPTYASAIQPAIPVFTFLFAVMMGTERVNLLRYEGIAKIGGTIICVFGAVLMVLYRGPALIGYSDLDHVAVNEISARGQPEPAGWLIDGLQDLGLDRFHVGVLCLIANCICMAAFLALQAPLLKKYHAHISLTAYSYFFGAVLMVISSIFMTDLSVDWTLKQSEIFAVVYAGVIASALNYGIITWSNKILGPALVSLYNPLQPAFSTLLSLIFLGSVIYLGSILGGLFIIAGLYIVTWGSYKEKQANAGVIPISSWVSEPLIHDKNAYQKGHTISGSSSITINPKSLD 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212367g00003 399 Pfam EamA-like transporter family 23 155 IPR000620 GO:0016020
Stsc212367g00003 399 Pfam EamA-like transporter family 211 348 IPR000620 GO:0016020
Stsc212367g00003 399 SUPERFAMILY Multidrug resistance efflux transporter EmrE 249 353 - -
Stsc212367g00003 399 SUPERFAMILY Multidrug resistance efflux transporter EmrE 58 165 - -
Stsc212367g00003 399 PANTHER WAT1-RELATED PROTEIN 25 355 IPR030184 GO:0016020|GO:0022857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212367g00003 Stsc-Chr212367 7907 11483 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212367g00003 106 377 Nodulin-like Gene Family AT5G45370 61.232 2.95e-120 348
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212367g00003 - - gmx:100787738 587.8