LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc212363g00002	ATGCAATTTTCTCAAAGATTACAAGGCTTCTATATCCCTTCAGTGGTTGACCTTCACCAATGGAGAGAGACAAATTATCTGGCACCACTTCTTCATTTGGGTTTCGAATATTATTGGAGGCTAGAGATGTCTATAGCTTCTGAAAACTCTGATACAGGTCCGAAGGAGAGGCTAATGGAATTGATGCATCGATCTGAAAACAAGTTTTGTGCTGATTGTGGAACTCCAGATTCAAAATGGGTATCTTCAAGTCTTGGAGTATTTATTTGCATCAAGTGTTCCAGCGTTCATCGAAGCTTAGGAGTCCACATAACGAAGGTTCTATCGTTGAAGCTCGATGAATGGACAGATGAGGAAGTTGATACATTACTCAATTTTGGTGGAAACACAACACTAAACAAGAAGTATGAAGCTTGCCTCCCAAGTAGCATTAGAAAACCAGACCCAAATTCATCAATTGAGGAACGCTCTAATTATATAAGGAGAAAATATGAGTTGTTACAATTTACTAGTGATGACAAGAAGTCACGACATACTATACATGTACCTTCTCAAGCAAGTAATTCATCACCACTTCAAAGTGATTCTTCTCCATTCAGTGATTCTCCTAGAGACAAAAAGCAACATGATAAAAATAAACATCGAATTGGGAATGCATTTCGACATATGGGAAGAAAAGATCATGAGCATAAAACTCCAAAGAAAACCAACTCATTGGCAGGTATGGTTGAATTTGTTGGATTTATTAAGGTTAATGTGGTTAAAGGCACAAACTTGGCTATTAGAGATGTAGTGTCTAGTGATCCTTATGTTGTCCTTTCTTTGGGTGACCAATCAGTAAAAACACGTGTCATAAAGAAGAGTTTGAATCCAGTGTGGAATGAAAGCCTAATGTTATCAATTCCAGAAAACATTCCTCCCCTTAAAGTGTGTGTATATGATAAGGACAAATTTTCAACCGATGATTTTATGGGTGAGGTTGAAATAGACATTGAACCTCTAGTTAAAGCTACAAAAGAATATGAGGAGTCTAAAAGCAATGAGCATATATAA	1053	0.3694	MQFSQRLQGFYIPSVVDLHQWRETNYLAPLLHLGFEYYWRLEMSIASENSDTGPKERLMELMHRSENKFCADCGTPDSKWVSSSLGVFICIKCSSVHRSLGVHITKVLSLKLDEWTDEEVDTLLNFGGNTTLNKKYEACLPSSIRKPDPNSSIEERSNYIRRKYELLQFTSDDKKSRHTIHVPSQASNSSPLQSDSSPFSDSPRDKKQHDKNKHRIGNAFRHMGRKDHEHKTPKKTNSLAGMVEFVGFIKVNVVKGTNLAIRDVVSSDPYVVLSLGDQSVKTRVIKKSLNPVWNESLMLSIPENIPPLKVCVYDKDKFSTDDFMGEVEIDIEPLVKATKEYEESKSNEHI	350

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc212363g00002	350	ProSiteProfiles	ARF GTPase-activating proteins domain profile.	55	177	IPR001164	GO:0005096
	Stsc212363g00002	350	Pfam	C2 domain	249	337	IPR000008	-
	Stsc212363g00002	350	MobiDBLite	consensus disorder prediction	175	236	-	-
	Stsc212363g00002	350	SMART	arf_gap_3	56	177	IPR001164	GO:0005096
	Stsc212363g00002	350	MobiDBLite	consensus disorder prediction	181	199	-	-
	Stsc212363g00002	350	Gene3D	Arf GTPase activating protein	40	179	IPR038508	-
	Stsc212363g00002	350	FunFam	stromal membrane-associated protein 1 isoform X1	42	175	-	-
	Stsc212363g00002	350	SMART	C2_3c	248	343	IPR000008	-
	Stsc212363g00002	350	Pfam	Putative GTPase activating protein for Arf	56	171	IPR001164	GO:0005096
	Stsc212363g00002	350	CDD	ArfGap	58	164	-	-
	Stsc212363g00002	350	ProSiteProfiles	C2 domain profile.	230	345	IPR000008	-
	Stsc212363g00002	350	SUPERFAMILY	ArfGap/RecO-like zinc finger	55	171	IPR037278	-
	Stsc212363g00002	350	SUPERFAMILY	C2 domain (Calcium/lipid-binding domain, CaLB)	244	339	IPR035892	-
	Stsc212363g00002	350	PANTHER	ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12	46	348	IPR044518	GO:0005096\|GO:0005543
	Stsc212363g00002	350	PRINTS	HIV Rev interacting protein signature	67	86	IPR001164	GO:0005096
	Stsc212363g00002	350	PRINTS	HIV Rev interacting protein signature	107	128	IPR001164	GO:0005096
	Stsc212363g00002	350	PRINTS	HIV Rev interacting protein signature	86	103	IPR001164	GO:0005096
	Stsc212363g00002	350	Gene3D	C2 domain	246	349	IPR035892	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc212363g00002	Stsc-Chr212363	3137	10370	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc212363g00002	48	278	C2H2 Transcription Factor Family	AT3G07940	55.172	3.88e-88	265

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc212363g00002	K12486		-	gmx:100789552	413.69