Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212363g00001 ATGTCTATAGCTTCTGAAAACTCTGATACAGGTCCGAAGGAGAGGCTAATGGAATTGATGCATCGATCTGAAAACAAGTTTTGTGCTGATTGTGGAACTCCAGATTCAAAATGGGTATCTTCAAGTCTTGGAGTATTTATTTGCATCAAGTGTTCCAGCGTTCATCGAAGCTTAGGAGTCCACATAACGAAGGTTCTATCGTTGAAGCTCGATGAATGGACAGATGAGGAAGTTGATACATTACTCAATTTTGGTGGAAACACAACACTAAACAAGAAGTATGAAGCTTGCCTCCCAAGTAGCATTAGAAAACCAGACCCAAATTCATCAATTGAGGAACGCTCTAATTATATAAGGAGAAAATATGAGTTGTTACAATTTACTAGTGATGACAAGAAGTCACGACATACTATACATGTACCTTCTCAAGCAAGTAATTCATCACCACTTCAAAGTGATTCTTCTCCATTCAGTGATTCTCCTAGAGACAAAAAGCAACATGATAAAAATAAACATCGAATTGGGAATGCATTTCGACATATGGGAAGAAAAGATCATGAGCATAAAACTCCAAAGAAAACCAACTCATTGTCAGTAAAAACACGTGTCATAAAGAAGAGTTTGAATCCAGTGTGGAATGAAAGCCTAATGTTATCAATTCCAGAAAACATTCCTCCCCTTAAAGTGTGTGTATATGATAAGGACAAATTTTCAACCGATGATTTTATGGGTGAGGTTGAAATAGACATTGAACCTCTAGTTAAAGCTACAAAAGAATATGAGGAGTCTAAAAGCAATGAGCATATATAA 810 0.3642 MSIASENSDTGPKERLMELMHRSENKFCADCGTPDSKWVSSSLGVFICIKCSSVHRSLGVHITKVLSLKLDEWTDEEVDTLLNFGGNTTLNKKYEACLPSSIRKPDPNSSIEERSNYIRRKYELLQFTSDDKKSRHTIHVPSQASNSSPLQSDSSPFSDSPRDKKQHDKNKHRIGNAFRHMGRKDHEHKTPKKTNSLSVKTRVIKKSLNPVWNESLMLSIPENIPPLKVCVYDKDKFSTDDFMGEVEIDIEPLVKATKEYEESKSNEHI 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212363g00001 269 CDD ArfGap 16 122 - -
Stsc212363g00001 269 Gene3D Arf GTPase activating protein 2 137 IPR038508 -
Stsc212363g00001 269 Pfam C2 domain 198 256 IPR000008 -
Stsc212363g00001 269 Gene3D C2 domain 177 268 IPR035892 -
Stsc212363g00001 269 SUPERFAMILY ArfGap/RecO-like zinc finger 13 129 IPR037278 -
Stsc212363g00001 269 ProSiteProfiles ARF GTPase-activating proteins domain profile. 13 135 IPR001164 GO:0005096
Stsc212363g00001 269 SMART C2_3c 57 262 IPR000008 -
Stsc212363g00001 269 FunFam stromal membrane-associated protein 1 isoform X1 2 133 - -
Stsc212363g00001 269 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 196 258 IPR035892 -
Stsc212363g00001 269 PRINTS HIV Rev interacting protein signature 25 44 IPR001164 GO:0005096
Stsc212363g00001 269 PRINTS HIV Rev interacting protein signature 65 86 IPR001164 GO:0005096
Stsc212363g00001 269 PRINTS HIV Rev interacting protein signature 44 61 IPR001164 GO:0005096
Stsc212363g00001 269 ProSiteProfiles C2 domain profile. 151 264 IPR000008 -
Stsc212363g00001 269 MobiDBLite consensus disorder prediction 180 194 - -
Stsc212363g00001 269 MobiDBLite consensus disorder prediction 139 157 - -
Stsc212363g00001 269 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 198 267 IPR044518 GO:0005096|GO:0005543
Stsc212363g00001 269 SMART arf_gap_3 14 135 IPR001164 GO:0005096
Stsc212363g00001 269 MobiDBLite consensus disorder prediction 133 200 - -
Stsc212363g00001 269 Pfam Putative GTPase activating protein for Arf 14 129 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212363g00001 Stsc-Chr212363 3137 10370 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212363g00001 13 260 C2H2 Transcription Factor Family AT4G21160 40.909 4.25e-65 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212363g00001 K12486 - gmx:100789552 330.487