Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212360g00001 ATGGAATTTGAAGAGCAAGAAGAGCAAGAGGAGGAAATGGGAATACCTGAGGCAACGCAGCCGCAAGCCACGCAAGCGAGTTACGACTCACTCGGAAACTCAGCGAAACTCGGTGGCGAGGGAACCGTCGGGTCAGGGTTTGGAAGAAAGGGAGCAGCGGCGTCGTCGGTGAGGTACCGTGAATGTCAGAAGAATCACGCCGTCAGCTTCGGCGGTCACGCCGTAGACGGTTGCTGCGAGTTCATGGCCGCCGGAGAGGACGGCTCGCTGGAGGCCGTTATCTGCGCCGCCTGTAACTGCCACCGAAACTTCCACCGCAAAGAGATCGACGGCGACATGAGCGGTGGAAGCGGCGCAGGGACCTTACATCACCACCGTCCTCAACCTCCTCCGCCGCATCTCCACCAATTCTCCACTTACTACCACCACCGCGGTCCGCCGTACCCGGCAGGGTACCTTAACCACCTTGCGACTCCTCCGATGGCACAGCACCGTCCTCTAGCACTTCCTCCCGCGGTTTCCGGCGGTGGACTCAGCAGAGACGAGGAGGACATGTCGAACCCTAGCAGCAGCGGCGGCGGCGGAGGCGGCAGAAGCGGTTCTTCGAAGAAAAGGTTCAGAACGAAGTTCACGCAGGAGCAGAAGGATAAGATGCTTGCTTTCGCTGAACAAGTTAAGATGTACTAG 687 0.591 MEFEEQEEQEEEMGIPEATQPQATQASYDSLGNSAKLGGEGTVGSGFGRKGAAASSVRYRECQKNHAVSFGGHAVDGCCEFMAAGEDGSLEAVICAACNCHRNFHRKEIDGDMSGGSGAGTLHHHRPQPPPPHLHQFSTYYHHRGPPYPAGYLNHLATPPMAQHRPLALPPAVSGGGLSRDEEDMSNPSSSGGGGGGRSGSSKKRFRTKFTQEQKDKMLAFAEQVKMY 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212360g00001 228 MobiDBLite consensus disorder prediction 162 214 - -
Stsc212360g00001 228 Gene3D - 188 227 - -
Stsc212360g00001 228 Pfam ZF-HD protein dimerisation region 57 109 IPR006456 -
Stsc212360g00001 228 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 30 226 - -
Stsc212360g00001 228 SUPERFAMILY Homeodomain-like 189 224 IPR009057 -
Stsc212360g00001 228 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 59 108 IPR006456 -
Stsc212360g00001 228 MobiDBLite consensus disorder prediction 1 50 - -
Stsc212360g00001 228 MobiDBLite consensus disorder prediction 18 32 - -
Stsc212360g00001 228 MobiDBLite consensus disorder prediction 183 197 - -
Stsc212360g00001 228 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 58 109 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212360g00001 Stsc-Chr212360 12591 13790 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212360g00001 1 225 ZF-HD Transcription Factor Family AT4G24660 44.889 6.03e-44 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Stsc212360g00001 ZF-HD_dimer 6.1e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212360g00001 - - gmx:100776421 288.115