Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212357g00001 ATGGCATTCCCACCACCACCTTCACAGAGTGCTGCTAATTTCATCTTCCACAATCATCAAGACCAAGATCTTCTTCATCATCATCATCATCAACCCTTCTCTTCTCCCTCTCTCAATTCCTTCCCTTCTTTGCCATTACCACCCCAACACCACTTCTTAGGTCAACCACACAACACACCCCCTCTCTTTCTCAAGATGGGTCCACACCAATTCTTCAACGATAAATTCTTAGGGGGTGGACCTTTCATGTTGAAAAGATCCATGTCGTTTTCAGGGATGGAGAACAAGTGCGGCGACGGTGATGACGATTTATCCGACGATGGGTTCGGGTTCCAATTTGGGGAGAAGAAGAAAAGACTGAACATTGAGCAAGTGAAAGCACTTGAAAAGAGCTTTGAATTAGGGAACAAGCTTGAACCCGAGAGAAAGGTGCAACTTGCTAAGGCCCTTAACTTACAACCGAGACAAATTGCTATTTGGTTTCAGAATAGAAGAGCAAGGTGGAAGACTAAGCAACTTGAAAGAGAATATGAATCTCTTAAGAGGCAGTTTGAAGCATTGAAGGTTGATAATGATGCACTTAGGTTGCACAATCAGAAATTACAAGCTGAGTTACAGGCCCTAATTAAAGGTAAGGAGTATTATTGTGAAGGTGGAACAACAACAATAAGCCTTAATAAGAAAGAAGCTGGTGGAGATGGTTCATGGAGCAATAATAATGGCAGTGACAATAATAATAATAATATCTCATCATCAGAGATTAACTTAGATCTCTCAAAAACACCAATTATAATAAACACTACCAGTCCTGTATCTTCACAAAATGCCAAAAGTACCCTTGATGAATCCAATAATAATAATTCTCTAAAGCCCAACAACAACAACAACATTATTCAGCTACTTCAATACTCACCATCATCATCTTCAAGAGCACAAGGGCTTCCTCAAGATGAAGGCTTATGCAACATGTTTCATCAACACATTGATGATGATGACCAACACAATCTGTGGCCCTGGCCTGAACACCAACCCCATAATAATTTCCATTGA 1050 0.4048 MAFPPPPSQSAANFIFHNHQDQDLLHHHHHQPFSSPSLNSFPSLPLPPQHHFLGQPHNTPPLFLKMGPHQFFNDKFLGGGPFMLKRSMSFSGMENKCGDGDDDLSDDGFGFQFGEKKKRLNIEQVKALEKSFELGNKLEPERKVQLAKALNLQPRQIAIWFQNRRARWKTKQLEREYESLKRQFEALKVDNDALRLHNQKLQAELQALIKGKEYYCEGGTTTISLNKKEAGGDGSWSNNNGSDNNNNNISSSEINLDLSKTPIIINTTSPVSSQNAKSTLDESNNNNSLKPNNNNNIIQLLQYSPSSSSRAQGLPQDEGLCNMFHQHIDDDDQHNLWPWPEHQPHNNFH 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212357g00001 349 SMART HOX_1 114 175 IPR001356 GO:0003677
Stsc212357g00001 349 CDD homeodomain 116 172 IPR001356 GO:0003677
Stsc212357g00001 349 FunFam Homeobox-leucine zipper protein ATHB-13 106 175 - -
Stsc212357g00001 349 MobiDBLite consensus disorder prediction 228 248 - -
Stsc212357g00001 349 ProSitePatterns 'Homeobox' domain signature. 146 169 IPR017970 GO:0000981|GO:0006355
Stsc212357g00001 349 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 86 323 IPR045224 GO:0003700
Stsc212357g00001 349 ProSiteProfiles 'Homeobox' domain profile. 111 171 IPR001356 GO:0003677
Stsc212357g00001 349 Pfam Homeobox associated leucine zipper 171 208 IPR003106 GO:0006355|GO:0043565
Stsc212357g00001 349 Pfam Homeodomain 116 169 IPR001356 GO:0003677
Stsc212357g00001 349 Gene3D - 114 178 - -
Stsc212357g00001 349 SUPERFAMILY Homeodomain-like 105 173 IPR009057 -
Stsc212357g00001 349 Coils Coil 163 204 - -
Stsc212357g00001 349 MobiDBLite consensus disorder prediction 269 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212357g00001 Stsc-Chr212357 1332 4117 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212357g00001 48 341 Homeobox Transcription Factor Family AT5G15150 43.574 3.39e-66 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Stsc212357g00001 Homeodomain 8e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212357g00001 K09338 - gmx:100797920 261.536