Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212348g00001 AAGATGGCAGAGCTTGGGTACGAGAGAAGTTCCAAGAAGTGCAAAGAGAAATTCGAGAACGTTTATAAGTACCATAAGAGAACAAAAGAAGGTCGAACTGGTAAATCAGATGGTAAAACTTACCGTTTCTTTGATCAATTAGAAGCTCTTGAGCATCAATCTCAAACACCACTTCTTCTTCATCATCAACAATCTCCTAAACCACCACCACCAACAACGGCAATGCCTCTGCCTCCGCCGCCACCAACTACAACACATGTCACTACTGTTCCATCAACAACAATCCCCATGGTTATCCCTTCATCCTACCAAACACCACCACCGCCACCACAACCACAACCAACAAACCCTACCACCACCACCACGATCCCCATTTCCTTCCCCAGCATCCCAACCGATCTCTTGTCCAACTCCACATCTTCCTCCACTTCCTCCGACGAAACCATGGAGGGAGGAAGGCGGAAGAATAGGAAGCGCAAGTGGAAGGAATTCTTCCACAAGCTAATGACGGAGGTCATTGAGAAGCAGGAGGAGCTTCAGAAGAGGTTTCTAGAAGCAGTGGAGAAGCGAGAGCGTGACCGCATGGCCAGGGAAGAATCTTGGAGGCTACAAGAGATGCAAAGGATTAATAGAGAGAGGGAGATCCTCGCCCAGGAGCGCTCCATCGCCGCCCAAAAAGACGCCGCCGTCATGTCCTTCTTGCAGAAGATAGCCGAACAGCACAATCTTGGACAAGCATTGAATAATACAATCAGCATTGTCCCGCCACAGCCACAGCCACAACCAATACCAAATGCAGCACCGGTGCAACAGCGTGTACTGACGGCACAGGTTGTTGCACCGGTTGCTGCTCAGCCTGTGGTACTGCCGGTGTCAGTGCCACCGGCCGTACCACAAGTAGTGACAAGTATGGAAATGGTTAAAGTTGGTGATAACAATGGGGAGAAATCGACGAGTGGAAGCTCGTCGAGGTGGCCGAAGGTGGAGGTGGAAGCATTGATAAGGCTGAGGACAAACATGGACGCCAAGTACCAAGAAAACGGACCAAAGGGGCCGTTATGGGAAGAGATCTCAGCATCAATGAAGAAGCTTGGGTACAACAGAAACCCCAAGAGGTGCAAGGAGAAGTGGGAGAACATCAACAAATACTTTAAGAAAGTCAAAGAGAGCAACAAGAAGAGGCCGGAAGATTCCAAGACGTGCCCTTACTTTCACCAGCTCGACGCTCTCTACAGGGAGAAGAACAAGCTGGACATGGCGGCGCCGAAGCCGCAGAGCATGGTGGCGCCGCTGATGGTTAGGCCGGAGCAGCAGTGGCCTCCTCAGCCCATGGAAGACGCGGAGAATGATCCCATGGACGAGGACGACGATGAGGAGGAGAAGGACATTGGAGACGAAGAAGAAGATGAAGATGATGGTGGTAGTAATGGTAATGGCAATGGCGGTAATAACTATGAGATAGTGGGAGGCAAGGCTGCTGCAGCAACAGCTTCTGCTGAGTAG 1503 0.5077 KMAELGYERSSKKCKEKFENVYKYHKRTKEGRTGKSDGKTYRFFDQLEALEHQSQTPLLLHHQQSPKPPPPTTAMPLPPPPPTTTHVTTVPSTTIPMVIPSSYQTPPPPPQPQPTNPTTTTTIPISFPSIPTDLLSNSTSSSTSSDETMEGGRRKNRKRKWKEFFHKLMTEVIEKQEELQKRFLEAVEKRERDRMAREESWRLQEMQRINREREILAQERSIAAQKDAAVMSFLQKIAEQHNLGQALNNTISIVPPQPQPQPIPNAAPVQQRVLTAQVVAPVAAQPVVLPVSVPPAVPQVVTSMEMVKVGDNNGEKSTSGSSSRWPKVEVEALIRLRTNMDAKYQENGPKGPLWEEISASMKKLGYNRNPKRCKEKWENINKYFKKVKESNKKRPEDSKTCPYFHQLDALYREKNKLDMAAPKPQSMVAPLMVRPEQQWPPQPMEDAENDPMDEDDDEEEKDIGDEEEDEDDGGSNGNGNGGNNYEIVGGKAAAATASAE 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212348g00001 500 MobiDBLite consensus disorder prediction 101 117 - -
Stsc212348g00001 500 Gene3D - 1 27 - -
Stsc212348g00001 500 Gene3D - 325 386 - -
Stsc212348g00001 500 MobiDBLite consensus disorder prediction 430 500 - -
Stsc212348g00001 500 SMART sant 321 383 IPR001005 -
Stsc212348g00001 500 Pfam Myb/SANT-like DNA-binding domain 1 50 IPR044822 -
Stsc212348g00001 500 Pfam Myb/SANT-like DNA-binding domain 323 410 IPR044822 -
Stsc212348g00001 500 PANTHER FI21293P1 1 462 - -
Stsc212348g00001 500 MobiDBLite consensus disorder prediction 100 157 - -
Stsc212348g00001 500 MobiDBLite consensus disorder prediction 118 147 - -
Stsc212348g00001 500 FunFam Trihelix transcription factor GT-2 325 386 - -
Stsc212348g00001 500 CDD GT1 323 388 - -
Stsc212348g00001 500 ProSiteProfiles Myb-like domain profile. 317 381 IPR001005 -
Stsc212348g00001 500 MobiDBLite consensus disorder prediction 63 86 - -
Stsc212348g00001 500 MobiDBLite consensus disorder prediction 50 87 - -
Stsc212348g00001 500 MobiDBLite consensus disorder prediction 447 474 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212348g00001 Stsc-Chr212348 9202 11118 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212348g00001 1 439 Trihelix Transcription Factor Family AT1G76880 53.319 5.96e-143 422
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Stsc212348g00001 Myb_DNA-bind_4 1.8e-22 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212348g00001 - - ahf:112712434 528.094