Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212340g00001 ATGACTCAACTTGACCTTGGTGAAAATATACTCTCTGGTACAATTCCATTCTCCATTGGAAACTTGACAGAACTCTCGGTATTAAGTTTATTGTCAAATGAATTTAGTGGCGAAATTCCAATAGAGATGAATAAGCTTACCAAATTGGAAATTCTACAATTGGCTCATAATAGTTTCCATGGCCAGTTACCTCATAACATTTGTGCTAGTGGAAATCTGGTTAGATTTTCAGCCAGCAACAACTACTTCACAGGAGTTGTTCCAAGTAGCTTAAAAAATTGCTCAAGCCTTGTAAGATTAAGGCTTGTAGGAAACCAAATAGCTGGAAATATGACCGAATCTTTCGGTGTATATCCAAACTTGGACTACATTGATTTGAGTGAAAATAATTTCCATGGCCATCTTTCATCAAAGTGGGGAAAATGTTCCAACATGACATCCCTCAAGATCTCCAACAACAATCTGTCAGGTCATATACCAACTGAACTAAGTGAGGCAACTAAATTACAAGAACTTGACTTGTCTTCGAATCATCTTACCGGAGTAATCCCAAAAGAGCTTGGCAAGATGACTTTGTTGATAAATCTCTTATTAAGCAACAACAATTTCTCAGGAAATGTTCCTATACAGATTTCATCCTTGCGAGAACTTGAGACCTTGGACCTTTCCAGGAATAATTTCAGTGGCCTCATCATAAAAGAACTTAGCATGCTGCCTAAGTTGTCCAACTTGAGTATGGCCGAAAATCGATTTAACGGAACTATTCCCGTCGATCTAGGGCAACTCAAATCTCTTCGTTATCTCGATCTTGGTGAGAATCTCTTGGATGGAACTATTCCGTCATCACTTGGGCAATTGATGATGTTAGAAATATTGAACCTTTCTCATAACAATCTTTCTGGTGTCATTCCCTCTAGTTTTGATGGCATGTTAAGTTTGACATCTGTGGATATATCATACAACCAATTGGAAGGTCCACTTCCAAATACTCCATTCGGCTTCAAAAACGCTACATTCGATGAATTGAGAGATAATAAAGGTTTGTGTGGTAATGTCACTGGTATAGAGCATTGCCTAGCATCATCAAGTGGTGATTCTCCTCATCATCACCATAAACATGTAGTGCTCATATTGGTCCTTACTTTGGCGTTTATAACAGCAGCAATCTTAGCCTTGTGGATATCATGCCGTCTCTACCAAAACAAAGGTCCAAAAGAAAGCCATGCCACAGAGACACGAACTCACAATTTATTTGCCATATGGAGTTATGATGGCAAGATGGTGTATGAAGATATTATTGAGGCCACTCAAGATTTTGACGACAAACATCTCATTGGAGTTGGAGGCTTTGGATCTATTTACAAAGCTGAGTTGTCCACCGGTCAAGTTGTTGCTGTGAAGAAGCTCCATTCAACACCAAATGATGAAGAAATGCCCAATCTCAAAACTTTCCATCGAGAGATTCAAGTCTTGACTGAGATCCGTCATCGCAACATTGTGAAGCTGTATGGGTTTTGTTCTCATTCTCGGTGCTGCTTCTTGGTTTACGAGATTATAGAAATGGGAAGCATTAATAAGATTCTGGGAAATGATGAAGAAGCGGTTCAATTTGATTGGAATAGGAGGAGATATATATCAGCAAAGAATATTCTTCTTGATTTGGAATATGAGGCTCATGTATCAGATTTTGGAACATCCAAAATTCTCAATCCAAATTCATCAAATTCGACCTCATTTGCAGGGACCTTTGGTTATGCAGCTCCAGAATTTGCTTACACAATGGAAGTGAATGAAAAGTGTGATGTGTATAGCTTTGGAATATTAGCATTGGAAATACTTTTGGGGAAGCATCCAGGAGATGTCGCATCATCATCATGTATGACAATGACACATGCATCAACACTTGATGATAATAATTCACTCCTGAAGGATAAGTTGGATCTTCGTCTTCCTTTCCCTACAAATCCAGTGGCAGGAGAGCTTATACAGATTGTGAAGATAGCAAGTGCATGTTTGACAGAAAGTCCATGTTCTCGTCCCACCATGGAACAAGTGGTGAAGGAACTTGTGGTGGCAAACATGGAATAA 2088 0.3903 MTQLDLGENILSGTIPFSIGNLTELSVLSLLSNEFSGEIPIEMNKLTKLEILQLAHNSFHGQLPHNICASGNLVRFSASNNYFTGVVPSSLKNCSSLVRLRLVGNQIAGNMTESFGVYPNLDYIDLSENNFHGHLSSKWGKCSNMTSLKISNNNLSGHIPTELSEATKLQELDLSSNHLTGVIPKELGKMTLLINLLLSNNNFSGNVPIQISSLRELETLDLSRNNFSGLIIKELSMLPKLSNLSMAENRFNGTIPVDLGQLKSLRYLDLGENLLDGTIPSSLGQLMMLEILNLSHNNLSGVIPSSFDGMLSLTSVDISYNQLEGPLPNTPFGFKNATFDELRDNKGLCGNVTGIEHCLASSSGDSPHHHHKHVVLILVLTLAFITAAILALWISCRLYQNKGPKESHATETRTHNLFAIWSYDGKMVYEDIIEATQDFDDKHLIGVGGFGSIYKAELSTGQVVAVKKLHSTPNDEEMPNLKTFHREIQVLTEIRHRNIVKLYGFCSHSRCCFLVYEIIEMGSINKILGNDEEAVQFDWNRRRYISAKNILLDLEYEAHVSDFGTSKILNPNSSNSTSFAGTFGYAAPEFAYTMEVNEKCDVYSFGILALEILLGKHPGDVASSSCMTMTHASTLDDNNSLLKDKLDLRLPFPTNPVAGELIQIVKIASACLTESPCSRPTMEQVVKELVVANME 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212340g00001 695 PANTHER LEUCINE RICH REPEAT KINASE 2 2 690 - -
Stsc212340g00001 695 SMART LRR_typ_2 214 237 IPR003591 -
Stsc212340g00001 695 SMART LRR_typ_2 167 190 IPR003591 -
Stsc212340g00001 695 SMART LRR_typ_2 288 309 IPR003591 -
Stsc212340g00001 695 SMART LRR_typ_2 262 286 IPR003591 -
Stsc212340g00001 695 SMART LRR_typ_2 46 70 IPR003591 -
Stsc212340g00001 695 SUPERFAMILY Protein kinase-like (PK-like) 425 687 IPR011009 -
Stsc212340g00001 695 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 47 362 - -
Stsc212340g00001 695 Pfam Leucine Rich Repeat 217 236 IPR001611 GO:0005515
Stsc212340g00001 695 Gene3D Phosphorylase Kinase; domain 1 401 517 - -
Stsc212340g00001 695 Pfam Leucine rich repeat 119 179 IPR001611 GO:0005515
Stsc212340g00001 695 Pfam Leucine rich repeat 264 323 IPR001611 GO:0005515
Stsc212340g00001 695 ProSitePatterns Protein kinases ATP-binding region signature. 445 468 IPR017441 GO:0005524
Stsc212340g00001 695 Gene3D Ribonuclease Inhibitor 1 359 IPR032675 -
Stsc212340g00001 695 PRINTS Leucine-rich repeat signature 169 182 - -
Stsc212340g00001 695 PRINTS Leucine-rich repeat signature 286 299 - -
Stsc212340g00001 695 SUPERFAMILY RNI-like 4 329 - -
Stsc212340g00001 695 ProSiteProfiles Protein kinase domain profile. 439 691 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc212340g00001 695 FunFam Leucine-rich repeat receptor protein kinase MSP1 402 518 - -
Stsc212340g00001 695 Pfam Protein kinase domain 440 530 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc212340g00001 695 Pfam Protein kinase domain 547 688 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc212340g00001 695 Gene3D Transferase(Phosphotransferase) domain 1 541 695 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212340g00001 Stsc-Chr212340 7419 10199 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212340g00001 1 588 Receptor kinase-like Gene Family AT4G08850 44.426 2.94e-160 486
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Stsc212340g00001 Pkinase 6.7e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212340g00001 - - gmx:100811066 785.793