Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Stsc212340g00001 | ATGACTCAACTTGACCTTGGTGAAAATATACTCTCTGGTACAATTCCATTCTCCATTGGAAACTTGACAGAACTCTCGGTATTAAGTTTATTGTCAAATGAATTTAGTGGCGAAATTCCAATAGAGATGAATAAGCTTACCAAATTGGAAATTCTACAATTGGCTCATAATAGTTTCCATGGCCAGTTACCTCATAACATTTGTGCTAGTGGAAATCTGGTTAGATTTTCAGCCAGCAACAACTACTTCACAGGAGTTGTTCCAAGTAGCTTAAAAAATTGCTCAAGCCTTGTAAGATTAAGGCTTGTAGGAAACCAAATAGCTGGAAATATGACCGAATCTTTCGGTGTATATCCAAACTTGGACTACATTGATTTGAGTGAAAATAATTTCCATGGCCATCTTTCATCAAAGTGGGGAAAATGTTCCAACATGACATCCCTCAAGATCTCCAACAACAATCTGTCAGGTCATATACCAACTGAACTAAGTGAGGCAACTAAATTACAAGAACTTGACTTGTCTTCGAATCATCTTACCGGAGTAATCCCAAAAGAGCTTGGCAAGATGACTTTGTTGATAAATCTCTTATTAAGCAACAACAATTTCTCAGGAAATGTTCCTATACAGATTTCATCCTTGCGAGAACTTGAGACCTTGGACCTTTCCAGGAATAATTTCAGTGGCCTCATCATAAAAGAACTTAGCATGCTGCCTAAGTTGTCCAACTTGAGTATGGCCGAAAATCGATTTAACGGAACTATTCCCGTCGATCTAGGGCAACTCAAATCTCTTCGTTATCTCGATCTTGGTGAGAATCTCTTGGATGGAACTATTCCGTCATCACTTGGGCAATTGATGATGTTAGAAATATTGAACCTTTCTCATAACAATCTTTCTGGTGTCATTCCCTCTAGTTTTGATGGCATGTTAAGTTTGACATCTGTGGATATATCATACAACCAATTGGAAGGTCCACTTCCAAATACTCCATTCGGCTTCAAAAACGCTACATTCGATGAATTGAGAGATAATAAAGGTTTGTGTGGTAATGTCACTGGTATAGAGCATTGCCTAGCATCATCAAGTGGTGATTCTCCTCATCATCACCATAAACATGTAGTGCTCATATTGGTCCTTACTTTGGCGTTTATAACAGCAGCAATCTTAGCCTTGTGGATATCATGCCGTCTCTACCAAAACAAAGGTCCAAAAGAAAGCCATGCCACAGAGACACGAACTCACAATTTATTTGCCATATGGAGTTATGATGGCAAGATGGTGTATGAAGATATTATTGAGGCCACTCAAGATTTTGACGACAAACATCTCATTGGAGTTGGAGGCTTTGGATCTATTTACAAAGCTGAGTTGTCCACCGGTCAAGTTGTTGCTGTGAAGAAGCTCCATTCAACACCAAATGATGAAGAAATGCCCAATCTCAAAACTTTCCATCGAGAGATTCAAGTCTTGACTGAGATCCGTCATCGCAACATTGTGAAGCTGTATGGGTTTTGTTCTCATTCTCGGTGCTGCTTCTTGGTTTACGAGATTATAGAAATGGGAAGCATTAATAAGATTCTGGGAAATGATGAAGAAGCGGTTCAATTTGATTGGAATAGGAGGAGATATATATCAGCAAAGAATATTCTTCTTGATTTGGAATATGAGGCTCATGTATCAGATTTTGGAACATCCAAAATTCTCAATCCAAATTCATCAAATTCGACCTCATTTGCAGGGACCTTTGGTTATGCAGCTCCAGAATTTGCTTACACAATGGAAGTGAATGAAAAGTGTGATGTGTATAGCTTTGGAATATTAGCATTGGAAATACTTTTGGGGAAGCATCCAGGAGATGTCGCATCATCATCATGTATGACAATGACACATGCATCAACACTTGATGATAATAATTCACTCCTGAAGGATAAGTTGGATCTTCGTCTTCCTTTCCCTACAAATCCAGTGGCAGGAGAGCTTATACAGATTGTGAAGATAGCAAGTGCATGTTTGACAGAAAGTCCATGTTCTCGTCCCACCATGGAACAAGTGGTGAAGGAACTTGTGGTGGCAAACATGGAATAA | 2088 | 0.3903 | MTQLDLGENILSGTIPFSIGNLTELSVLSLLSNEFSGEIPIEMNKLTKLEILQLAHNSFHGQLPHNICASGNLVRFSASNNYFTGVVPSSLKNCSSLVRLRLVGNQIAGNMTESFGVYPNLDYIDLSENNFHGHLSSKWGKCSNMTSLKISNNNLSGHIPTELSEATKLQELDLSSNHLTGVIPKELGKMTLLINLLLSNNNFSGNVPIQISSLRELETLDLSRNNFSGLIIKELSMLPKLSNLSMAENRFNGTIPVDLGQLKSLRYLDLGENLLDGTIPSSLGQLMMLEILNLSHNNLSGVIPSSFDGMLSLTSVDISYNQLEGPLPNTPFGFKNATFDELRDNKGLCGNVTGIEHCLASSSGDSPHHHHKHVVLILVLTLAFITAAILALWISCRLYQNKGPKESHATETRTHNLFAIWSYDGKMVYEDIIEATQDFDDKHLIGVGGFGSIYKAELSTGQVVAVKKLHSTPNDEEMPNLKTFHREIQVLTEIRHRNIVKLYGFCSHSRCCFLVYEIIEMGSINKILGNDEEAVQFDWNRRRYISAKNILLDLEYEAHVSDFGTSKILNPNSSNSTSFAGTFGYAAPEFAYTMEVNEKCDVYSFGILALEILLGKHPGDVASSSCMTMTHASTLDDNNSLLKDKLDLRLPFPTNPVAGELIQIVKIASACLTESPCSRPTMEQVVKELVVANME | 695 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Stsc212340g00001 | 695 | PANTHER | LEUCINE RICH REPEAT KINASE 2 | 2 | 690 | - | - | |
Stsc212340g00001 | 695 | SMART | LRR_typ_2 | 214 | 237 | IPR003591 | - | |
Stsc212340g00001 | 695 | SMART | LRR_typ_2 | 167 | 190 | IPR003591 | - | |
Stsc212340g00001 | 695 | SMART | LRR_typ_2 | 288 | 309 | IPR003591 | - | |
Stsc212340g00001 | 695 | SMART | LRR_typ_2 | 262 | 286 | IPR003591 | - | |
Stsc212340g00001 | 695 | SMART | LRR_typ_2 | 46 | 70 | IPR003591 | - | |
Stsc212340g00001 | 695 | SUPERFAMILY | Protein kinase-like (PK-like) | 425 | 687 | IPR011009 | - | |
Stsc212340g00001 | 695 | FunFam | Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 | 47 | 362 | - | - | |
Stsc212340g00001 | 695 | Pfam | Leucine Rich Repeat | 217 | 236 | IPR001611 | GO:0005515 | |
Stsc212340g00001 | 695 | Gene3D | Phosphorylase Kinase; domain 1 | 401 | 517 | - | - | |
Stsc212340g00001 | 695 | Pfam | Leucine rich repeat | 119 | 179 | IPR001611 | GO:0005515 | |
Stsc212340g00001 | 695 | Pfam | Leucine rich repeat | 264 | 323 | IPR001611 | GO:0005515 | |
Stsc212340g00001 | 695 | ProSitePatterns | Protein kinases ATP-binding region signature. | 445 | 468 | IPR017441 | GO:0005524 | |
Stsc212340g00001 | 695 | Gene3D | Ribonuclease Inhibitor | 1 | 359 | IPR032675 | - | |
Stsc212340g00001 | 695 | PRINTS | Leucine-rich repeat signature | 169 | 182 | - | - | |
Stsc212340g00001 | 695 | PRINTS | Leucine-rich repeat signature | 286 | 299 | - | - | |
Stsc212340g00001 | 695 | SUPERFAMILY | RNI-like | 4 | 329 | - | - | |
Stsc212340g00001 | 695 | ProSiteProfiles | Protein kinase domain profile. | 439 | 691 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Stsc212340g00001 | 695 | FunFam | Leucine-rich repeat receptor protein kinase MSP1 | 402 | 518 | - | - | |
Stsc212340g00001 | 695 | Pfam | Protein kinase domain | 440 | 530 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Stsc212340g00001 | 695 | Pfam | Protein kinase domain | 547 | 688 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Stsc212340g00001 | 695 | Gene3D | Transferase(Phosphotransferase) domain 1 | 541 | 695 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Stsc212340g00001 | Stsc-Chr212340 | 7419 | 10199 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Stsc212340g00001 | 1 | 588 | Receptor kinase-like Gene Family | AT4G08850 | 44.426 | 2.94e-160 | 486 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
PK | RLK-Pelle_LRR-XI-1 | Stsc212340g00001 | Pkinase | 6.7e-16 | CL0016 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Stsc212340g00001 | - | - | gmx:100811066 | 785.793 |