Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212337g00004 ATGACATCAAATATCATATTCGTCTTGGAACGTGAGAACTACGTGCTTTCTGGAGTAACTGTTATTGGACAAGCATGTATAGCTGTTGATGAGAAAATCTTAAATGGTGATGAAGTAGACAAATGTTTTGACATAGTTGATGAGAACAAAAAGCCCATACATGGGGCTCCAAAGATCCATATCAAGCTACAATTTTCTGATGCTGAACGACACCCAAACTGGTCTAAAGGAATCAAAGATGGTAACTTTCTTGGAGTTCCTAGCACTTTCTTCCCACAACGAAAGGGATGCAAGGTTACTCTTTATCAAGATGCTCATGTCCTAAATGATTTTTCCCCAAAAGTAGTGCTTGATGGAGGTGACACTTACAAGCCTCAAAGATGTTGGGAGGATATATTTGAAGCAATCAATGAAGCAAAACACTTTATATACATTGCTGGCTGGTCTCTTTACACTCAAATTTCTCTTATAAGAGATCCAAAGAGGCCAAAGCATGGAGACATAACACTTGGCGAGCTTCTAAAGAAAAAGGCAAAAGACGATGGAGTCAAGGTTGTACTGCTTCTATGGCAGGATGGAATTACACTTCCAGTAATTGGATATCGCATCACAGTCATAGGAACTCATGATAAAGAGACCGAAAGCTATTTCAAGAACACTAATGTGCACTGCGTTTTATGCCCTCGTGACAGTCTTTACTACACTCACCATCAAAAGATGGTGGTGGTGGATGCTAAGTTGCTAACAAATGAAGAGTCACAAAAGAGAAGAATAGTGAGTTTCATTGGAGGTATTGATCTCTGTGATGGAAGATATGATACTCAATGTCACTCTCTTTTTCAAACTTTAGCCGCTGAACACAGTAAAGATTTTTATCAACCAAGCATTGATGGCTCTTCAATTGAAAAAGGTGGTCCTAGGGAGCCATGGCATGACGTGCATTGCAAGCTTGAAGGCCCAATCGCATGGGATGTTTATTCTACCTTTGTGGAAAGATTTAAGAAACAAGGCACAGATCAGGGCATGCTTCTTTCAGAAGAAAAGATTAAAAACTGTATCGTTTCGTCGTCTCAAGCAACAAACCCTAATGATAATGACAGTTGGAACATTCAGTTATTCAGATCCATTGATGATACAGCTACTCTTGGGTTTCCAGAAAGTTCTAAAAAAGCTTTCGAAGTTGGGCTTGTTAGTAGTGAGGAGAAGAAGATGATAGATCGGAGCATTCAAGATGCATACATAAGTGCTATTCGTCGTGCTAAGAACTTCATCTACATTGAGAATCAATACTTCATAGGAAGCGTTTTCGGTTGGAGTGCGGATCGCACCGAATTTGATGCTTGGAATCTAATCCCAAAGGAGCTTTCACTCAAAATTGTTAGCAAGATTAAAGCAAAAGAGAAGTTCATGGTGTATGTAGTGATTCCAATGTGGCCAGAGGGTGTTCCAAAAGATAATAAGATTACTGGACCTGGAACTGTTCAGAAGATACTGTATTTGCAAAGGAGGACCATAGAAATGATGTATAAGGACATTGTTGAATCACTCAAGGAAGAGAAAATTGAAGAAGATCTTCATAAATATTTATCATTCTTCTGTCTTGGCAATCGAGAGATGAAGAAGGAGGGAGAATATGTGCCTCCAAAAACACCAAAAAAAGGTTCCCATTACCAAAAATCCCAAGAGGCCAGACGCTTCATGATTTATGTGCATGCCAAGATGATGATAGTTGATGATGAATACATAATCATCGGATCTGCCAACATCAATCAGAGATCAATGGATGGAGGAAGAGACTCCGAGATTGCCATGGGAGCTTATCAACCGCACCATTTGGCCACCAACCAAGGTGGT 1854 0.3981 MTSNIIFVLERENYVLSGVTVIGQACIAVDEKILNGDEVDKCFDIVDENKKPIHGAPKIHIKLQFSDAERHPNWSKGIKDGNFLGVPSTFFPQRKGCKVTLYQDAHVLNDFSPKVVLDGGDTYKPQRCWEDIFEAINEAKHFIYIAGWSLYTQISLIRDPKRPKHGDITLGELLKKKAKDDGVKVVLLLWQDGITLPVIGYRITVIGTHDKETESYFKNTNVHCVLCPRDSLYYTHHQKMVVVDAKLLTNEESQKRRIVSFIGGIDLCDGRYDTQCHSLFQTLAAEHSKDFYQPSIDGSSIEKGGPREPWHDVHCKLEGPIAWDVYSTFVERFKKQGTDQGMLLSEEKIKNCIVSSSQATNPNDNDSWNIQLFRSIDDTATLGFPESSKKAFEVGLVSSEEKKMIDRSIQDAYISAIRRAKNFIYIENQYFIGSVFGWSADRTEFDAWNLIPKELSLKIVSKIKAKEKFMVYVVIPMWPEGVPKDNKITGPGTVQKILYLQRRTIEMMYKDIVESLKEEKIEEDLHKYLSFFCLGNREMKKEGEYVPPKTPKKGSHYQKSQEARRFMIYVHAKMMIVDDEYIIIGSANINQRSMDGGRDSEIAMGAYQPHHLATNQGG 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212337g00004 618 Gene3D Endonuclease Chain A 367 614 - -
Stsc212337g00004 618 PANTHER PHOSPHOLIPASE D 4 612 IPR015679 -
Stsc212337g00004 618 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 566 593 IPR001736 GO:0003824
Stsc212337g00004 618 Gene3D Endonuclease Chain A 116 366 - -
Stsc212337g00004 618 Pfam Phospholipase D Active site motif 234 271 IPR001736 GO:0003824
Stsc212337g00004 618 Pfam Phospholipase D Active site motif 567 593 IPR001736 GO:0003824
Stsc212337g00004 618 SMART pld_4 566 593 IPR001736 GO:0003824
Stsc212337g00004 618 SMART pld_4 232 271 IPR001736 GO:0003824
Stsc212337g00004 618 SUPERFAMILY Phospholipase D/nuclease 72 335 - -
Stsc212337g00004 618 SUPERFAMILY Phospholipase D/nuclease 407 607 - -
Stsc212337g00004 618 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 232 271 IPR001736 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212337g00004 Stsc-Chr212337 20669 24688 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212337g00004 1 616 Phospholipase D Gene Family (Wang group) AT3G15730 56.872 0.0 739
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212337g00004 K01115 - pop:18096711 735.332