Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212337g00002 ATGCAAGGTTTCTCTTTACCAAGATGCTCATGTCCCAGACAGTGCCGTCCACCAAGTGTAGTCCTTGATGGAGATGAGATTTACAAGCCTAAGAGATGTTGGGAGGAGATGTATGATGCAATCAATGAAGCAAAACACATTATATACATCACTGGTTGGTCTCTTTTCACTCAGATTTCTTTGGTAAGAGATCTAAGTAGACCACATCCTAGAAGAGGCGAAATACTAGGTGAGTTGCTCAAGAGAAAGGCAGAGGTTGATGGAGTTAGGGTTGTACTTCTTCTTTGGAATGATATAATAGCAACTTCACTCTTTAAAAATGCTGGTTTAATGGATACTCATTGTAAAGAAACCCAAAAGTATTTTAAAGATACTAAGGTGCATTGTGTTTTATGCACTCGTGATAATGTTTTCTACACTCATCACCAAAAGATTGTGGTGGTGGATGCTAAGTTTTCAAATGGAGAAAACTCAGATAAGAGAAGAATAGTAAGTTTCATTGGAGGTATTGATCTCTGTGGCGGAAGATATAATACTCAATTCCACTCTTTGTTTAGAACCCTAGCCACAGATAATAGTAAAGATTTTCATCAACCAAGCATCACGGACTCTGCAATTGAGAAAGGCGGGCCAAGAGAGCCATGGCATGATGTGCACTGTAAGCTTGAAGGGAGAATTGCATGGGATGTTTGTTCCACCTTTGTAGAGAGATTTAAGAAACAAGTCATAGATCAGAGCAAGCTTCTTTCAGAGGAAGATTTCAAACATTTCATTGTTGCACCATCTCAAGTAATTGGCCCTGATGAGAAGGATGCGTGGAATGTTCAGTTATTCAGATCCGTTGATGACAGTGCTACCGTTGGGTTTTCAGAATCTGCTGAAGATGCTTTCAAAGTTGGGCTTGTCAATGAGGAGGACAAGACGATAGATAGAAGCATTCAAGATGCATATATTCAAGCTATTAGGCAGGCGAAGAATTTCATCTATATTGAGAATCAATATTTCATAGGAAGCGATTTCGATTGGAATGTTGATGAGAAAAAAGAGCACTCTGATGCAGTGAATCTAATACCAAAGGAGCTTTCACTTAAGATCGTCAGCAAGATCAAAGCCCGGAAAAGGTTTGTTGTGTGTGTTGTTATTCCAATGTGGCTGGAGGGTGTCCCTGAGAGTGGAGCTGTTCAGAAAATATTATACTTGCAAAGGAGGACCATAGAGATGATGTACAAGGACATTGTTCAAGCACTCAAGGAAGAAGGACTAAAGGAAGATCCTTAG 1278 0.3983 MQGFSLPRCSCPRQCRPPSVVLDGDEIYKPKRCWEEMYDAINEAKHIIYITGWSLFTQISLVRDLSRPHPRRGEILGELLKRKAEVDGVRVVLLLWNDIIATSLFKNAGLMDTHCKETQKYFKDTKVHCVLCTRDNVFYTHHQKIVVVDAKFSNGENSDKRRIVSFIGGIDLCGGRYNTQFHSLFRTLATDNSKDFHQPSITDSAIEKGGPREPWHDVHCKLEGRIAWDVCSTFVERFKKQVIDQSKLLSEEDFKHFIVAPSQVIGPDEKDAWNVQLFRSVDDSATVGFSESAEDAFKVGLVNEEDKTIDRSIQDAYIQAIRQAKNFIYIENQYFIGSDFDWNVDEKKEHSDAVNLIPKELSLKIVSKIKARKRFVVCVVIPMWLEGVPESGAVQKILYLQRRTIEMMYKDIVQALKEEGLKEDP 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212337g00002 425 Gene3D Endonuclease Chain A 21 257 - -
Stsc212337g00002 425 PANTHER PHOSPHOLIPASE D 29 421 IPR015679 -
Stsc212337g00002 425 Gene3D Endonuclease Chain A 258 423 - -
Stsc212337g00002 425 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 137 176 IPR001736 GO:0003824
Stsc212337g00002 425 SUPERFAMILY Phospholipase D/nuclease 311 408 - -
Stsc212337g00002 425 SUPERFAMILY Phospholipase D/nuclease 27 240 - -
Stsc212337g00002 425 Pfam Phospholipase D Active site motif 138 176 IPR001736 GO:0003824
Stsc212337g00002 425 SMART pld_4 137 176 IPR001736 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212337g00002 Stsc-Chr212337 2395 4263 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212337g00002 18 425 Phospholipase D Gene Family (Wang group) AT3G15730 55.213 9.89e-163 476
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212337g00002 K01115 - csv:101206113 492.271