Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212336g00001 ATGACAGATTCTGCATACAAGGTTGACACCACCTCACGCCTTGCTCAATGGAGGATCGACAACTTGGCCTCTTGCACTTACCGCAAATCTGATCCTTTCAAGATCGGAAAATGGAACTGGCATTTGTCTGTGGAGAAGAACAGGGTTTTGTTTGTAAAATTGTACCCAGAAATTTCGAATCTGACACGAGATAACCCCCCAATTGCGTCTTTCATCATTAGGGTGGTTAGTTCTGTTGGAGATCGCAAGTACCTCACTCATCCAGAGATAAGAGATAAAGTGATAAAGAGCAACGATGACTTTGTTTGGGCAATTGAGGGTGAAGAACCTTGTTCTATCTGGGCTGGCGGTTTTACTCAGGAAAGATCAAATGCGACGGCGCTCAACACTCTGGGTAAAATGCTAACAGAAGGGATTCACACAGACATAACCATCAATGCAGCGGACGGAAGCATAGGAGCTCACCGGGCAGTTCTAGCTGCCCGGTCGCCTGTGTTTCGCAGCATGTTTTCGCATAATCTAAAGGAGAAAGAGCTTTCAACTGTCAACATCCAAGACATGTCGATTGAAGCTTGCCAGGCACTTCTAAACTATCTCTATGGGATCATTAAGAACGACGAGTTCTTGATGCATAGATTGTCCCTTCTACATGCTGCTGATAAGTATGACATATCAGACCTGAGAGAGGCATGTCATGAGAGTCTTCTAGAAGACATTGACACGAAGAATGTCCTCGAGAGGCTCCAAAACGCGTCGCTGTTTAGGCTGATGAAGCTGAAGATGACCTGCATTAGATATCTTGTGAAATTCGGTAAGGTGTTCGAGATTCGTGATGATTTCAATTGCTTCCTGCAAAATGCAGATAGGGATTTGATTGCTGAAGTCTTCCATGAAGTTCTTGATGCATGGAAAGGATTCTGA 921 0.4452 MTDSAYKVDTTSRLAQWRIDNLASCTYRKSDPFKIGKWNWHLSVEKNRVLFVKLYPEISNLTRDNPPIASFIIRVVSSVGDRKYLTHPEIRDKVIKSNDDFVWAIEGEEPCSIWAGGFTQERSNATALNTLGKMLTEGIHTDITINAADGSIGAHRAVLAARSPVFRSMFSHNLKEKELSTVNIQDMSIEACQALLNYLYGIIKNDEFLMHRLSLLHAADKYDISDLREACHESLLEDIDTKNVLERLQNASLFRLMKLKMTCIRYLVKFGKVFEIRDDFNCFLQNADRDLIAEVFHEVLDAWKGF 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212336g00001 306 SUPERFAMILY POZ domain 125 237 IPR011333 -
Stsc212336g00001 306 Gene3D Potassium Channel Kv1.1; Chain A 119 269 IPR011333 -
Stsc212336g00001 306 ProSiteProfiles BTB domain profile. 141 200 IPR000210 GO:0005515
Stsc212336g00001 306 PANTHER OS08G0495500 PROTEIN-RELATED 5 305 IPR044714 -
Stsc212336g00001 306 SMART BTB_4 141 239 IPR000210 GO:0005515
Stsc212336g00001 306 Pfam BTB/POZ domain 133 237 IPR000210 GO:0005515
Stsc212336g00001 306 CDD BTB_POZ_ZBTB_KLHL-like 140 222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212336g00001 Stsc-Chr212336 7113 9020 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Stsc212336g00001 BTB 8.6e-24 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212336g00001 K10523 - gmx:100790186 541.576