Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212334g00002 ATGATTGGAGGTAAAGAGCTTCTTCGTAATGGTGGTGTTGACTCTCCGGATGAGAGCTCAAGAAGCAAGCTCACAAGGCCCAATTTTGAGCCCACCAGGGATAACAAAGCTGTTGAATTTCTCAGAGATTCACAGACGGGTGCTCTTGACGGTGTTCTTCACTCAAAGCCAACAACCACCACCAGCAAGTTGACGGTGCTTGGCGGTGCCAGCTCAGGATTGCAAGAACTCACCCTCAGCTACCTCTGTGATGCACAAAGGCTGGGTCTTGCTGCTGATAAGGATATTCCTATTCCTGGTAAGAGCTTATTGCTGAATAATCATTCTTTAGAAAAAGTTGTTAGCCACAAAGGAAAAGAGATTCTTGTTTCTGAGAATTTAAATCATCTTGATGGTGGTAAATTTGTTGAAAGAGATTTCTTGAGCCTGAGTGATACAAGAGAGAATAATTCCTCAAAGCGATCGGTTGAGGAAGAAGAAGAAGAAGAAGAGCAAGAGAGTAACAGGGAGAAGAAGCCAAGGCTTGAGACGCTGAACCTCTCTCTTGCTTTGCCTGATGTCTCACTCTCTCTCACCGCTTCAAACGCTTTACAAAACGGTGCTACTGATCAACAACAACCACAACTGCTTCGGCCTAAACCTACCAGGCCCTCAACTACAACATACTCTAATGATTGCACACCAACACCTTCTTTGTCTTACTCTTACTCTCACCCTTTCTCACACAACCCAAGTTGCTCTCTTACCCGCAATTCAACCGATAATTTTGACTACTCTCTGAGTAAGGATGACCAAATTTGGAATTGTGGTGAGGGGACTAACGGTTCTGTTCATAGTAGGTTCAAGCCTATTGGAGATGGGGTTGGTTTTTCCAATCATGGTGGTGGTGGTGGTATTAGCTCCTTTATGCAGGGTAATAGCCAGTTTAAGACTACTAGTTCGGATAACCATTCCTTTTTCCCTTCTGAATTGCCTGCCAGGCCGAGATTTGAAGCTCAATCCGGGGACTCGAGAGGTAGGAATTCTGAGAATGTGAGAATCTTGGAAGGGTTAGATGTTGGGGGGAAGGTGAAGAAGCTCTCTAGGCCTGAGAGGATCCTGAGGGAAGTTGTTTCTGAGTCCATTCCTGCTGCTGCATTGATGATTCAGGAGCTTGCTGATGAAGTCATAGCTTCAACAAAGGAATACCTGAAGAATCTCATTGAGAAGCCTGACAAGAAGGATGAATTGGTCAGCCTACAAAGCAGGCTTGAAAGAAGATCTGACCTCTCGAAAGAGTCTCTTTCCAAGTGCCACAAGGTGCAGCTGGAGATTCTGGTGTCTGTCAAGATGGGGCTTGCAAGCTTCTTATCTGGTAAAATTCAACTATCTGAGATGGTAGAGGTTTTCTTGTATAGGAGATGTAGGAATGTTAACTGCAAGAGTCTGCTTCCTGTGGATGACTGTGACTGCAAGATTTGCTCAGGGAATAAGGGATTTTGTAGTTCTTGTATGTGTCCTATTTGTTTGAACTTCGATTGCGCAAGCAATACTTGTAGTTGGGTTGGTTGTGATGTTTGTTCCCATTGGTGCCATGCTGCCTGTGGCATTCAGAGGAATCTCATCAAGCCAGGGCCAAGCTTGAAGGGACCTGCAGGGACCTCAGAAATGCAGTTTCATTGTATTGGCTGTGGACATGCTTCTGAAATGTTTGGGTTCGTTAAGGATGTGTTCATGTGTTGTGCAAAGGATTGGGGACTTGAAACCTTGATGAAAGAGCTCGACTGCGTGAGGAGGATTTTTAGGGGAAGTGAAGACCGTAAAGGGAAAGAATTGCATGTTAAAACTGATGACATGCTGTTAAAGCTTCAAACTAAAATGGTTTCTCCTTCGGATGCTTGCAATTACATCACACAATTTTTCAACTATGCAGATAGCTTGCCGGACTTTCCTCCTCTTTCTGCCATATCTTCAAAGGATATGGCGGCATCATCTCAATCCAACATTACAAAAGACACATCATCTCTTCCGAAAACCAGTTCTTTAATGCCTAAATATGGGTACGACATGAGCAGCTATTCTAGGCCACATTCTAGTGCATTGCCAAATGATCTTCATCAAAAGGACCTCAAAGCTTCCATATTAAGCGAACTGAAAACTGAGGCTGATTTCCAACTGGGGGCTTTGCTGAGGAAGGGTGGACTTGAGAGCTTGGAGAGCATTGTGCGGATAAAGGAGGCAGAAGCCAAAATGTTTCAGACCAAGGCAGATGAAGCAAGGAGGGAGGCAGAAGGTTTCCAGAAGATGATCAGGACAAAGACTGCACAGATGGAAGAAGAATATGCTGAAAAGCTAGCCAAATTGTGTTTGCATGAGACTGAGGAAATGAGGAGGAAGAAACTGGAAGAACTGAAAGTCTTGGAAGTGGCAGTGGCAGCTAGCATTGGCTATGGTGATTGGAGCTACAAATAG 2451 0.4455 MIGGKELLRNGGVDSPDESSRSKLTRPNFEPTRDNKAVEFLRDSQTGALDGVLHSKPTTTTSKLTVLGGASSGLQELTLSYLCDAQRLGLAADKDIPIPGKSLLLNNHSLEKVVSHKGKEILVSENLNHLDGGKFVERDFLSLSDTRENNSSKRSVEEEEEEEEQESNREKKPRLETLNLSLALPDVSLSLTASNALQNGATDQQQPQLLRPKPTRPSTTTYSNDCTPTPSLSYSYSHPFSHNPSCSLTRNSTDNFDYSLSKDDQIWNCGEGTNGSVHSRFKPIGDGVGFSNHGGGGGISSFMQGNSQFKTTSSDNHSFFPSELPARPRFEAQSGDSRGRNSENVRILEGLDVGGKVKKLSRPERILREVVSESIPAAALMIQELADEVIASTKEYLKNLIEKPDKKDELVSLQSRLERRSDLSKESLSKCHKVQLEILVSVKMGLASFLSGKIQLSEMVEVFLYRRCRNVNCKSLLPVDDCDCKICSGNKGFCSSCMCPICLNFDCASNTCSWVGCDVCSHWCHAACGIQRNLIKPGPSLKGPAGTSEMQFHCIGCGHASEMFGFVKDVFMCCAKDWGLETLMKELDCVRRIFRGSEDRKGKELHVKTDDMLLKLQTKMVSPSDACNYITQFFNYADSLPDFPPLSAISSKDMAASSQSNITKDTSSLPKTSSLMPKYGYDMSSYSRPHSSALPNDLHQKDLKASILSELKTEADFQLGALLRKGGLESLESIVRIKEAEAKMFQTKADEARREAEGFQKMIRTKTAQMEEEYAEKLAKLCLHETEEMRRKKLEELKVLEVAVAASIGYGDWSYK 816
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212334g00002 816 Coils Coil 149 169 - -
Stsc212334g00002 816 MobiDBLite consensus disorder prediction 302 320 - -
Stsc212334g00002 816 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 459 480 IPR004082 -
Stsc212334g00002 816 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 768 790 IPR004082 -
Stsc212334g00002 816 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 381 403 IPR004082 -
Stsc212334g00002 816 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 578 597 IPR004082 -
Stsc212334g00002 816 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 420 435 IPR004082 -
Stsc212334g00002 816 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 505 525 IPR004082 -
Stsc212334g00002 816 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 729 749 IPR004082 -
Stsc212334g00002 816 MobiDBLite consensus disorder prediction 19 34 - -
Stsc212334g00002 816 Pfam PHD - plant homeodomain finger protein 468 592 IPR032881 -
Stsc212334g00002 816 MobiDBLite consensus disorder prediction 1 34 - -
Stsc212334g00002 816 Coils Coil 735 769 - -
Stsc212334g00002 816 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 144 803 IPR004082 -
Stsc212334g00002 816 CDD PHD_OBE1_like 498 557 IPR047578 -
Stsc212334g00002 816 Coils Coil 783 803 - -
Stsc212334g00002 816 Pfam Coiled-coil region of Oberon 696 802 IPR032535 -
Stsc212334g00002 816 MobiDBLite consensus disorder prediction 146 174 - -
Stsc212334g00002 816 MobiDBLite consensus disorder prediction 302 343 - -
Stsc212334g00002 816 MobiDBLite consensus disorder prediction 199 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212334g00002 Stsc-Chr212334 8771 12916 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212334g00002 468 597 PHD Gene Family AT5G57380 25.954 3.11e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212334g00002 - - gmx:100820216 1167.91