Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212324g00004 ATGGTGTATGTTAAGGCCCAGAAATCCAAGGCCTACTTCAAGAGGTATCAAGTAAAGTTCAAGAGAAGAAGAGAGGGAAAGACCGATTACAGAGCCAGGATTCGATTGATTAACCAGGACAAGAACAAATACAACACCCCAAAGTACCGCTTTGTTGTGCGATTTACAAACAAGGATATTGTTGCACAGATTACATCTGCTAGCATTGCTGGGGATATTGTTCTTGCGGGAGCTTATGCACATGAATTGCCCCGCTATGGTCTTGAAGTAGGCCTTACTAACTATGCTGCAGCTTATTGTACTGGACTTCTCCTTGCCCGCCGAGTACTTAAGATGCTTGAAATGGACGAGGAGTATCAAGGGAATGTAGAGGCTACTGGTGAGGATTTCTCTGTTGAACCTGCTGACACCAGGAGGCCTTTCCGTGCTCTTCTTGATGTTGGTCTTATCAAGACCACAACGGGAAACCGTGTGTTCGGTGCCCTCAAGGGAGCTTTAGATGGGGGTTTGGATATCCCTCACAGTGACAAAAGGTTTGCTGGTTTTGACAAAGAGAAGAAGGAGCTTGATCCTGAAGTTCACCGCAAGTATATCTTTGGTGGACATGTTGCTTCCTACATGAGGACTTTGCAGGAAGATGAACCAGAAAAATACCAGTCACATTTCAGCGAATATATCAAGCGTGGAATCGAAGCTGATGGACTTGAGTCTCTGTACAAAAAGGTTCATGCTGCCATTCGTGCTGATCCTACCATCAAGAAGTCAGAGAAGCCTGCTCCAAAGGAACACAAGAGGTACAACCTCAAGAAGCTTACCTATGAGGAGAGGAAGAATAAGTTGATTGCACGCCTGCAAGCTCTCAACTCCGCCGCAGGTGGTGGTGACGACGATGATGAGGACGACGAATGA 909 0.462 MVYVKAQKSKAYFKRYQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIVAQITSASIAGDIVLAGAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDEEYQGNVEATGEDFSVEPADTRRPFRALLDVGLIKTTTGNRVFGALKGALDGGLDIPHSDKRFAGFDKEKKELDPEVHRKYIFGGHVASYMRTLQEDEPEKYQSHFSEYIKRGIEADGLESLYKKVHAAIRADPTIKKSEKPAPKEHKRYNLKKLTYEERKNKLIARLQALNSAAGGGDDDDEDDE 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212324g00004 302 Coils Coil 270 290 - -
Stsc212324g00004 302 CDD Ribosomal_L18_L5e 41 170 - -
Stsc212324g00004 302 Gene3D - 1 291 - -
Stsc212324g00004 302 PANTHER RIBOSOMAL PROTEIN L5-RELATED 1 290 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Stsc212324g00004 302 PRINTS Ribosomal protein L5 signature 20 39 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Stsc212324g00004 302 PRINTS Ribosomal protein L5 signature 43 62 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Stsc212324g00004 302 PRINTS Ribosomal protein L5 signature 84 104 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Stsc212324g00004 302 PRINTS Ribosomal protein L5 signature 206 226 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Stsc212324g00004 302 PRINTS Ribosomal protein L5 signature 164 183 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Stsc212324g00004 302 PRINTS Ribosomal protein L5 signature 144 163 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Stsc212324g00004 302 Hamap 50S ribosomal protein L18 [rplR]. 14 246 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Stsc212324g00004 302 FunFam 60S ribosomal protein L5 1 291 - -
Stsc212324g00004 302 Pfam Ribosomal L18 C-terminal region 235 288 IPR025607 -
Stsc212324g00004 302 SUPERFAMILY Translational machinery components 11 252 - -
Stsc212324g00004 302 Pfam Ribosomal large subunit proteins 60S L5, and 50S L18 14 175 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212324g00004 Stsc-Chr212324 21635 24303 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212324g00004 1 292 Cytoplasmic Ribosomal Protein Gene Family AT3G25520 83.904 0.0 514
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212324g00004 K02932 - gmx:100805868 531.176