Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212316g00003 ATGGCTTCTTCTTCTCTCACGGGAAAATCTAGAGTGGTTTCAACCTCCGTCCCTGACCCTAAGGGTTGCCAACCTCGGCCAAGTGTTGGTGGTAGGAATTTCAAGGTCCTTGTAGAAAATGAACGGATTAAAGTTGCCAATCTGCTGACGAAATCTGTGAGAGAAGTGGGTTCAACTTCGAGAACGGGTGCTGCTGTAGCTGGTAATCATAAGGGAGGCTTCAAAAAAAGTATGGATAAAAGCAATAGCAAATGTATTACTTCTGCAAATACAAATGTGAGAAAGGCATTGGCTGATGTTAGTAATGTTCAAGGAAAGACTGCAACAAATATTGGACGTGATAGCTCCAAAATGAAGGTTTTAGCAGGTTCAAACATTAAAAAAGGGGGCATCAACTTGAGGAAATCCTTCACGGGAACAATGTTAAGAAACAGAAGCAATGATGTCAAGTCAGGTGCTCCAAAGAAAGAACTAGGCACAGATGTGAGATCAGCTTTAAAGGATCAGAAGGATAATGCACATGGTGGCCCATCAGTTATCACAAAAGACAGGTTTGCGAAGAAGCCTATATTACCTACAAATCCAAGCAATTCAAGGAAATCCTTACCAATACCAAGGAAGTCCTTACCAGCACCAAGGAAGGTTTACAGAGCAGATGAAAGTGCTGGAAGTACTGTAACAGCAGAAGCACGAAGTTCTCTCCCATTTAAGGCAACAGCAAGTAGAAGAGTTAGTTCCCAGCTAACTAATGCAAGAAACAATGTGCGGAAGACACGAATGAGTGATGGCTTTGCTCAAACGGGTCAATCCAAAGTTGTATATGGATCTTCAAGGAAGTCTATCATGCCTCTTAATCTTAAGACTGAAGTCATGGCTTCTACTACTCACATGACTTCAAAACCAAAACGCATATCAGGTCAGAACAAATCACAATCAAATGCTGCAATATCGTCTCACGATGAGGAAGCACTTCCATTGCCTCTTCCAGTGAATGGTTTGGCATCAGTTTCTGATGATGCAAATCAAGGACGTGTTCCATCTGATGGAGAGAGCAACTTGGGAGTATATTTACCAGATCTCATTCCAACGAAAAAGTCAAGCCGCAGGAAATCTTATACAACTTCATTGATGGAAGGATCTAAGCTTCTCAAGCAAAGGCGTGAAGTTAGTGAGCAGGATAACCTACCAAATATAGATGATGATTGCAATCATTTAGAAGTACCTGAATACGTTGATGACATTTATCAGTACTATTGGGTTACTGAGGCGCAAAATCCAGCTTTGGCAAATTACATGTCCAATCAGACAGAAATTACACCTTATATGCGGGGCATTTTGATCAACTGGTTGATTGAAGTCCACATGAAGTTTGATTTGATGCCAGAAACGCTATATCTCACAGTTACACTATTGGATCAATATCTTTCCATGGTGAAAATAAAAAAGACAGATATGCAGTTAGTTGGTCTAACAGCACTTTTGCTGGCTTCAAAATATGAGGACTTTTGGCATCCTAGAGTTAAAGATTTAACAAGCATCTCGGTTGAGTCATATACAAGAGATCAAATGCTTGAAATGGAGAAGCTTATTCTTAGGAAATTGAAGTTTCGTCTTAATGCTCCTACTCCTTATGTTTTCTTGCTTGAACACATGGCATTCTTTCTCGTTGACCTATGCTTGGTTGAATATGAAACTCTAGCATTCAAGCCCTCATTATTATGTGCATCAGCTCTCTATGTTGCACGTTGCACTTTGCAGATTGAGCCGCCATGGACGCCATTGTTGCAGAAACATGCACGCTATGATATTTCAGAAATCAGGGGTTGCGCCAACATGATATTGAATCTCCATAAGGCTGCCAATGTTGGAAAGCTAAAGGTTGCATATGAAAAGTACTCAAGAAAGGAGCTACGTTTTGTTGCAGCAGTGAAACCGTTGGATAGCCTTCCCTTGTGA 1956 0.409 MASSSLTGKSRVVSTSVPDPKGCQPRPSVGGRNFKVLVENERIKVANLLTKSVREVGSTSRTGAAVAGNHKGGFKKSMDKSNSKCITSANTNVRKALADVSNVQGKTATNIGRDSSKMKVLAGSNIKKGGINLRKSFTGTMLRNRSNDVKSGAPKKELGTDVRSALKDQKDNAHGGPSVITKDRFAKKPILPTNPSNSRKSLPIPRKSLPAPRKVYRADESAGSTVTAEARSSLPFKATASRRVSSQLTNARNNVRKTRMSDGFAQTGQSKVVYGSSRKSIMPLNLKTEVMASTTHMTSKPKRISGQNKSQSNAAISSHDEEALPLPLPVNGLASVSDDANQGRVPSDGESNLGVYLPDLIPTKKSSRRKSYTTSLMEGSKLLKQRREVSEQDNLPNIDDDCNHLEVPEYVDDIYQYYWVTEAQNPALANYMSNQTEITPYMRGILINWLIEVHMKFDLMPETLYLTVTLLDQYLSMVKIKKTDMQLVGLTALLLASKYEDFWHPRVKDLTSISVESYTRDQMLEMEKLILRKLKFRLNAPTPYVFLLEHMAFFLVDLCLVEYETLAFKPSLLCASALYVARCTLQIEPPWTPLLQKHARYDISEIRGCANMILNLHKAANVGKLKVAYEKYSRKELRFVAAVKPLDSLPL 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212316g00003 651 CDD CYCLIN_CCNB1-like_rpt1 407 536 - -
Stsc212316g00003 651 SUPERFAMILY Cyclin-like 403 539 IPR036915 -
Stsc212316g00003 651 SMART cyclin_7 533 615 IPR013763 -
Stsc212316g00003 651 SMART cyclin_7 448 532 IPR013763 -
Stsc212316g00003 651 PANTHER CYCLINS 375 633 IPR039361 -
Stsc212316g00003 651 MobiDBLite consensus disorder prediction 294 318 - -
Stsc212316g00003 651 FunFam Cyclin N-terminal domain containing 2 428 539 - -
Stsc212316g00003 651 Pfam Cyclin, N-terminal domain 413 539 IPR006671 -
Stsc212316g00003 651 Pfam Cyclin, C-terminal domain 548 643 IPR004367 -
Stsc212316g00003 651 MobiDBLite consensus disorder prediction 149 170 - -
Stsc212316g00003 651 MobiDBLite consensus disorder prediction 294 358 - -
Stsc212316g00003 651 Gene3D - 533 650 - -
Stsc212316g00003 651 SMART Cyclin_C_2 541 646 IPR004367 -
Stsc212316g00003 651 SUPERFAMILY Cyclin-like 541 649 IPR036915 -
Stsc212316g00003 651 Gene3D - 428 532 - -
Stsc212316g00003 651 MobiDBLite consensus disorder prediction 1 30 - -
Stsc212316g00003 651 MobiDBLite consensus disorder prediction 143 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212316g00003 Stsc-Chr212316 9082 17788 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212316g00003 29 651 Core Cell Cycle Gene Families AT1G16330 40.000 6.67e-141 424
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212316g00003 K21777 - gmx:100808850 686.026