Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212306g00006 ATGAGGAAGCCGAATAATAATAGTAGTAGTAGTGAGCAATGCAATAATAATAAGTTGAGGAAAGGGTTGTGGTCGCCGGAGGAAGATGAGAAGTTGATGAAATACATGATGAACAATGGACAAGGTTGTTGGAGTGATGTTGCTAAGAATGCGGGGCTTCAAAGGTGTGGTAAGAGTTGTCGACTCAGATGGATCAATTATCTCAGACCTGACCTTAAACGAGGTGCTTTCTCTTCCCATGAAGAGCAACTCATCATCCACTTCCACTCACTTCTTGGAAACAG 284 0.4261 MRKPNNNSSSSEQCNNNKLRKGLWSPEEDEKLMKYMMNNGQGCWSDVAKNAGLQRCGKSCRLRWINYLRPDLKRGAFSSHEEQLIIHFHSLLGN 94
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212306g00006 94 MobiDBLite consensus disorder prediction 1 20 - -
Stsc212306g00006 94 Pfam Myb-like DNA-binding domain 21 68 IPR001005 -
Stsc212306g00006 94 SUPERFAMILY Homeodomain-like 23 94 IPR009057 -
Stsc212306g00006 94 CDD SANT 24 68 IPR001005 -
Stsc212306g00006 94 SMART sant 20 70 IPR001005 -
Stsc212306g00006 94 FunFam MYB transcription factor 18 74 - -
Stsc212306g00006 94 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 16 72 IPR017930 -
Stsc212306g00006 94 MobiDBLite consensus disorder prediction 1 23 - -
Stsc212306g00006 94 ProSiteProfiles Myb-like domain profile. 16 68 IPR001005 -
Stsc212306g00006 94 PANTHER MYB DOMAIN PROTEIN 55 12 94 - -
Stsc212306g00006 94 Gene3D - 18 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212306g00006 Stsc-Chr212306 24218 24523 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212306g00006 1 94 MYB Transcription Factor Family AT5G12870 75.532 2.96e-47 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Stsc212306g00006 Myb_DNA-binding 1.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212306g00006 K09422 - qsu:111996538 168.318