Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212306g00002 ATGGAGACTTTTGAGAAAGAAATGAATGAAATGAGGGAGTATTATGGGAGTGGAGAGACAAAGAAAGTGTCATGGAGAGAGTCACAACTCAAAGGGTTGCGTCGTTTCCTTGTTGAAAAAGAACATGATATTTTGAAGGCCTTAATGCTTGACTTAGGGAAGCATCAAATTGAAGCTTTTAGAGATGAGATAGGAACTTTGATTAAGTCCTTGAATTTGGCATTGAGTGACTTGAAATATTGGATTTCAGGCAAAAAGGCTAAATTGCCACAAATAGCACTGCTTTCAAGTGCAGAAATTATTCCTGAGCCTCTGGGCCTAATCCTCATTATTTCATCTTGGAATTTCCCCTTTGGTTTATCATTGGAGCCACTAATAGGAGCAGTAGCAGCTGGAAACACAGTGGTTCTAAAGCCTTCAGAGTTGTCACCATCTTGTTCTTCCATACTCGCCCTTGGACTTTCCAATTACTTGGATAACAAAGCCATTAAGGTTGTACAAGGTGGACCAAATGAGTCTCACCATCTACTCCAGCAAAAATGGGACAAAATCTTCTTCACTGGAAGTGCACGTGTTGGGAGGATTGTGATGTCTGCAGCAGCAAAACATTTGACTCCTGTGACTTTGGAGTTGGGTGGAAAATGTCCTGCAGTTGTTGATTCACTTTCATTATCTTCCTGGGACTTGGAGGTAACTGTGAAGAGGATTCTGGTGGGGAAATATGGGGCATGTGGTGGTCAAGCTTGCATAGCAATTGACTATGTCTTGGTGGAAAATCAATACTATTCAAAATTGGTGGAATTGATGAAACCATGGATCAAGAAAATGTTTGGGGAGAACCCAAAAGACTCCAACACCATTGTTAGGATTGTTAATAAACAACACTTGTCTAGGTTGAAGAATCTTTTGGCTGATCCAAAGGTCAAGAAATCTGTGGTTTATGGAGGCTCTGTAGACGAAAGAAACTTATTTATTGAGCCAACAATCTTGTTGAATCCCCCACTTGAATCAGCAATCATGACTGAAGAAATTTTCGGCCCCTTGCTTCCAATTATTACTGTGGACAAAATTGAAGATAGTATTAAATTCATAAGTTCTAGGCCTAAGCCTCTTGCACTTTATGTCTTTTCGAAGGATAAGTCACTGCAGAATAGAATGATATCTGAAACATCTTCTGGCAGTTTGACTTTCAATGATGCAATTATACATTATGCAGCGGATGCTCTACCATTTGGTGGAGTTGGAGAAAGTGGATTTGGAATGTACCATGGGAAGTTCTCTTTTGACACATTCAGCCACCAAAAGCCAGTAGTTAGAAGAAGCTTCTTCACTGATTTCTGGTACAGGTTTCCACCATGGACAATGAACAAGTTTCAGCTTCTTGAGGTCTCTTACAACTATGATTATCTGGGATTACTCCTTGTCCTGCTTGGCCTAAAGTCACCATCAAAACACAGATCATACTTCATCAACCCCTGTTAA 1482 0.4022 METFEKEMNEMREYYGSGETKKVSWRESQLKGLRRFLVEKEHDILKALMLDLGKHQIEAFRDEIGTLIKSLNLALSDLKYWISGKKAKLPQIALLSSAEIIPEPLGLILIISSWNFPFGLSLEPLIGAVAAGNTVVLKPSELSPSCSSILALGLSNYLDNKAIKVVQGGPNESHHLLQQKWDKIFFTGSARVGRIVMSAAAKHLTPVTLELGGKCPAVVDSLSLSSWDLEVTVKRILVGKYGACGGQACIAIDYVLVENQYYSKLVELMKPWIKKMFGENPKDSNTIVRIVNKQHLSRLKNLLADPKVKKSVVYGGSVDERNLFIEPTILLNPPLESAIMTEEIFGPLLPIITVDKIEDSIKFISSRPKPLALYVFSKDKSLQNRMISETSSGSLTFNDAIIHYAADALPFGGVGESGFGMYHGKFSFDTFSHQKPVVRRSFFTDFWYRFPPWTMNKFQLLEVSYNYDYLGLLLVLLGLKSPSKHRSYFINPC 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212306g00002 493 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 213 417 IPR016163 GO:0016620
Stsc212306g00002 493 Pfam Aldehyde dehydrogenase family 12 435 IPR015590 GO:0016491
Stsc212306g00002 493 FunFam Aldehyde dehydrogenase 213 417 - -
Stsc212306g00002 493 FunFam Aldehyde dehydrogenase 12 216 - -
Stsc212306g00002 493 PIRSF ALDH 1 473 IPR012394 GO:0006081
Stsc212306g00002 493 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 12 435 IPR016162 GO:0016491
Stsc212306g00002 493 SUPERFAMILY ALDH-like 12 454 IPR016161 GO:0016491
Stsc212306g00002 493 PANTHER ALDEHYDE DEHYDROGENASE 2 472 IPR012394 GO:0006081
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212306g00002 Stsc-Chr212306 1544 4110 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212306g00002 2 480 Aldehyde Dehydrogenase Gene Family AT4G36250 53.862 0.0 563
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212306g00002 K00128 - gmx:100817701 758.059